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  • Sequence

    Diunggah oleh

    Musyoka Thommas Mutemi
    23 tayangan4 halaman
    sequence data betanodavirus

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    sequence data betanodavirus

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    23 tayangan4 halaman

    Sequence

    Diunggah oleh

    Musyoka Thommas Mutemi
    sequence data betanodavirus

    Hak Cipta:

    Attribution Non-Commercial (BY-NC)
    Unduh sebagai DOC, PDF, TXT atau baca online dari Scribd
    Tandai sebagai konten tidak pantas
    dari 4

    Coat protein (AA No.

    1- 338 (SJNNV: 340))


    Accession No. RGNNV: AY690596 DGNNV: AF245004 SGNNV SGWak97: AY324870 RBNNV- Korea: DQ116035 DIEV: AY284972 SJNNV: NC-003449 TPNNV: D38637 (partial sequence) BFNNV: D38635 (partial sequence)
    53 1 RGNNV MVRKGEKKLAKPATTKAANPQPRRRANNRRRSNRTDAPVSKASTVTGFGRGTN DGNNV MVRKGEKKLAKPPTTKAANPQPRRRANNRRRSNRTDAPVSKASTVTGFGRGTN SGNNV SGWak97

    MVRKGEKKLAKPATTKAANPQPRRRANNRRRSNRTDAPVSKASTVTGFGRGTN

    RBNNV-Korea MVRKGEKKLAKPATTKAANPQPRRRANNRRRSNRTDAPVSKASTVTGFGRGTN DlEV MVRKGDKKLAKPATTKAANPQPRRRANNRRRSNRTDAPVSKASTVTGFGRGTN


    2001Nag Tsushima

    SJNNV TPNNV BFNNV

    MVRKGEKKLAKPATTKAANPQPRRRANNRRRSNRTDAPVSKASTVTGFGRGTN MVRKGDKKLAKPPTTKAANSQPRRRATQRRRSGRADAPLAKASTITGFGRATN
    D 75-Catalytic domain DxxDxD motif (Ca ligand during virion formation

    54

    135

    DVHLSGMSRISQAVLPAGTGTDGYVVVDATIVPDLLPRLGHAARIFQRYAVETLEFEIQPMCPANTGGGYVAGFLPDPTDN DVHLSGMSRISQAVLPAGTGTDGYVVVDATIVPDLLPRLGHAARIFQRYAVETLEFEIQPMCPANTGGGYVAGFLPDPTDN SGNNV SGWak97 DVHLSGMSRISQAVLPAGTGTDGYVVVDATIVPDLLPRLGHAARIFQRYAVETLEFEIQPMCPANTGGGYVAGFLPDPTDN RBNNV-Korea DVHLSGMSRISQAVLPAGTGTDGYVVVDATIVPDLLPRLGHAARIFQRYAVETLEFEIQPMCPANTGGGYVAGFLPDPTDN DlEV DVHLSGMSRISQAVLPAGTGTDGYVVVDATIVPDLLPRLGHAARIFQRYAVETLEFEIQPMCPANTGGGYVAGFLPDPTDN


    RGNNV DGNNV

    2001Nag

    Tsushima

    DVHLSGMSRISQAVLPAGTGTDGYVVVDATIVPDLLPRLGHAARIFQRYAVETLEFEIQPMCPANTGGGYVAGFLPDPTDN SJNNV DVHISGMSRIAQAVVPAGTGTDGKIVVDSTIVPELLPRLGHAARIFQRYAVETLEFEIQPMCPANTGGGYVAGFLPDPTDN TPNNV DVHLSGMSRIAQAVLTAGTGADGYVVVNEIIVPELLPRLGHAARIFQRYIVETLEFDIQPMCPANTGGGYVAGFLPDPTDN BFNNV DVHLTGMSRIAQAVIPAGTGTDGYIVVDETIVPELLPRLGFAARIFQRYAVETLEFEIQPMCPANTGGGYVAGFLPDPTDS

    136

    216

    RGNNV

    DHTFDALQATRGAVVAKWWESRTVRPQYTRTLLWTSSGKEQRLTSPGRLILLCVGNNTDVVNVSVLCRWSVRLSVPSLETP
    DGNNV

    DHTFDALQATRGAVVAKWWESRTVRPQYTRTLLWTSSGKEQRLTSPGRLILLCVGNNTDVVNVSVLCRWSVRLSVPSLETP
    SGNNV SGWak97

    DHTFDALQATRGAVVAKWWESRTVRPQYTRTLLWTSSGKEQRLTSPGRLILLCVGNNTDVVNVSVLCRWSVRLSVPSLETP
    RBNNV-Korea

    DHTFDALQATRGAVVAKWWESRTVRPQYTRTLLWTSSGKEQRLTSPGRLILLCVGNNTDVVNVSVLCRWSVRLSVPSLETP
    DlEV

    DHTFDALQATRGAVVAKWWESRTVRPQYTRTLLWTSSGKEQRLTSPGRLILLCVGNNTDVVNVSVLCRWSVRLSVPSLETP
    2001Nag Tsushima

    DHTFDALQATRGAVVAKWWESRTVRPQYTRTLLWTSSGKEQRLTSPGRLILLCVGNNTDVVNVSVLCRWSVRLSVPSLETP
    SJNNV

    DHTFDALQATRGAVVAKWWESRTVRPQYTRTLLWTSTGKEQRLTSPGRLVLLCVGSNTDVVNVSVMCRWSVRLSVPSLETP
    TPNNV

    DHTFDAIQATRGAVVAKWWESRTVRPQYARTLLWTSTGKEQRLTSPGRLILLCVGSNTDVVNVSVLCRWSVRLSVPSLETP
    BFNNV

    DHTFDAIQATRGAVVAKWWESRTIRPQYARALLWTSVGKEQRLTSPGRLILLCVGNNTDVVNVSVLCRWSVRLSVPSLETP
    PDG motif: neutralizing epitopes 235 that determine viral infectivity 217 Variable region 300 RGNNV EETTAPIMTQGSLYNDS- -LSTNDFKSILLGSTPLDIAPDGAVFQLDRPLSIDYSLGTGDVDRAVYWHLKKFAGNAGTPAGWFR DGNNV EETTAPIMTQGSLYNDS- -LSTNDFKSILLGSTPLDIAPDGAVFQLDRPLSIDYSLGTGDVDRAVYWHLKKFAGNAGTPAGWFR SGNNV SGWak97 EETTAPIMTQGSLYNDS-LSTNDFKSILLGSTPLDIAPDGAVFQLDRPLSIDYSLGTGDVDRAVYWHLKKFAGNAGTPAGWFR RBNNV-Korea EETTAPIMTQGSLYNDS- -LSTNDFKSILLGSTPLDIAPDGAVFQLDRPLSIDYSLGTGDVDRAVYWHLKKFAGNAGTPAGWFR DlEV EETTAPIMTQGSLYNDS- -LSTNDFKSILLGSTPLDIAPDGAVFQLDRPLSIDYSLGTGDVDRAVYWHLKKFAGNAGTPAGWFR 2001Nag Tsushima EETTAPIMTQGSLYNDS-LSTNDFKSILLGSTPLDIAPDGAVFQLDRPLSIDYSLGTGDVDRAVYWHLKKFAGNAGTPAGWFR SJNNV EDTTAPITTQAPLHNDSINNGYTGFRSILLGATQLDLAPANAVFVTDKPLPIDYNLGVGDVDRAVYWHLRKKAGDTQVPAGYFD TPNNV EETFAPITSQGPLYNDSITTATSGFRSILLGSGQLDIAPPGTVYSIDRPLSIDYNLGVGDVDRAVYWHLLKKKGDPNNPAGFLD BFNNV EDTFAPILTLGPLYNDS- -LAANDFKSILLGSTQLDIAPEGAVYSLDRPLSIDYSLGTGDVDRAVYWHVKKVAGNVGAPAGWFH

    316 301 Variable region 338 (340) WGIWDNFNKTFADGVAYYSDEQPRQILLPVGTVCTRVDSEN RGNNV WGIWDNFNKTFTDGVAYYSDEQPRQILLPVGTVCTRVDSEN DGNNV SGNNV SGWak97 WGIWDNFNKTFADGVAYYSDEQPRQILLPVGTVCTRVDSEN RBNNV-Korea WGIWDNFNKTFADGVAYYSDEQPRQILLPVGTVCTRVDSEN WGIWDNFNKTFTDGVAYYSDEQPRQILLPVGTVCTRVDSEN DlEV 2001Nag Tsushima WGIWDNFNKTFTDGVAYYSDEQPRQILLPVGTVCTRVDSEN WGLWDDFNKTFTVGAPYYSDQQPRQILLPAGTLFTRVDSEN SJNNV WGLWDDFNKVFTTGVAYYSDQQPRQILLPVGT TPNNV BFNNV WGLWDNFNKTFTQGVAYYSDAQPRQILLPVGT 2001NagTsushima..Our lab strain MVRKGEKKLAKPATTKAANPQPRRRANNRRRSNRTDAPVSKASTVTGFGRGTNDVHLSGM SRISQAVLPAGTGTDGYVVVDATIVPDLLPRLGHAARIFQRYAVETLEFEIQPMCPANTG GGYVAGFLPDPTDNDHTFDALQATRGAVVAKWWESRTVRPQYTRTLLWTSSGKEQRLTSP GRLILLCVGNNTDVVNVSVLCRWSVRLSVPSLETPEETTAPIMTQGSLYNDSLSTNDFKS ILLGSTPLDIAPDGAVFQLDRPLSIDYSLGTGDVDRAVYWHLKKFAGNAGTPAGWFRWGI WDNFNKTFTDGVAYYSDEQPRQILLPVGTVCTRVDSEN

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