OS filesystem commands

Get current working directory:

shellgetcwd -fout <field>

Get current working directory to a field name of the output field

This command allows user to retrieve his/her position in the filesystem hierarchy.
Set current working directory:

shellsetcwd -path <path>

Set current working directory new path in the filesystem

This command allows user to set his/her position in the filesystem hierarchy
Create a new directory:

shellmkdir -dir <dirname> [-path <path>]

Create a new directory name of the new directory operating path (default path is './')

This command allows user to create a new directory in the filesystem

Remove an existing directory:

shellrmdir -dir <dirname> [-path <path>]

Remove an existing directory name of the directory to be removed operating path (default path is './')

This command allows user to remove an existing directory in the filesystem.

Copy an existing file to another location:

shellcp

Copy an existing file to another location name of the file source path (default path is './') destination path (default path is './')

-file <file> [-srcpath <sourcepath>] [-destpath <destpath>]

This command allows user to copy an existing file to another location in the filesystem. NOTE: Source path and destination path cannot be the same directory, and one of them (or both) has to be specified
Copy files to another location:

shellcpall

Copy existing files to another location

[-srcpath <sourcepath>] source path (default path is './') [-destpath <destpath>] [-r] destination path (default path is './') operation is recursive

This command allows user to copy existing files to another location in the filesystem. NOTE: Source path and destination path cannot be the same directory, and at least one of them has to be specified.
Remove an existing file:

Shellrm -file <file> [-path <path>]

Remove an existing file name of the file operation path (default path is './')

This command allows user to copy an existing file in the filesystem.

Remove existing files:

Shellrmall [-path <path>] [-r]

Remove existing files operation path (default path is './') operation is recursive

This command allows user to remove existing files in the filesystem.

List files and directories:

Shellls -fout <field> [-path <path>] [-sort]

List files and directories name of the output field listing source path (default path is './') sort entries to alpha accending order

This command allows user to list existing files and directories in the filesystem.
List directories:

Shelllsdir
-fout

List all subdirectories in a specified directory name of the output field

<field>

[-path <path>] [-sort]

listing source path (default path is './') sort entries to alpha accending order

This command allows user to list existing directories in the filesystem.

List files:

Shelllsfile -fout <field> [-path <path>] [-sort]

List all files in a specified directory name of the output field listing source path (default path is './') sort entries to alpha accending order

This command allows user to list existing files in the filesystem. Subsections

Data and SOM operations Image operations Textual data processing Probabilistic calculation Socket communication

Undocumented commands
Data and SOM operations

equ -d <datain> -dout <dataout> [-d2 <statdata> -md <mdata>] fldquar -d <datain> -fout <fldout> [-v <value>]

fnoise -d <datain> -f <field> -dout <dataout> -fout <fldout> [-step <stepval> -max <maxval>] gagrps -cmac <compose-mac> -emac <eval-mac> -min <minfld> -max <maxfld> -cout <cldataout> [-imax <iter-max> -gmax <gmax>] grp2rt -d <datain> -d2 <statdata> -c1 <groups> -c2 <cldata> -rtout <dataout> -p <percent> matchrec -d1 <datain1> -d2 <datain2> -dout <dataout> [-pref <prefix>] - Match data records in frames <datain1> and <datain2> nclosest -s <som> -d <datain> -l <layer> -nn <nn> -cout <cldataout> [-w <wmatrix> -dout <dataout>] - Find <nn> closest neurons for given data items nlargest -d <datain> -f <fld> -cout <cldataout> -nn <nn> -thres <thvalue> - Find <nn> largest values from data noise -d <datain> -dout <dataout> -p <percent> - Add normally distributed noise to data. Amount is specified as a percentage of the original variance norm -d <datain> -dout <dataout> [-md <mdata>] rt2text -rt <tree> -o <fileout> [-d <symdata> -sig <attrsig> -sort] - Convert a rule tree into text somcoord -s <som> -d <datain> -c <cldata> -dout <dataout> [-w <wmatrix> -l <layer>]
Image operations

comatrix -in <iname> -out <outname> [-dx <xval> -dy <yval> -sign] contrast -in <iname> -out <outname> -lambda <lval> -kappa <kval> correlation -in <iname> -out <outname> -lambda <lval> -kappa <kval> energy -in <iname> -out <outname>

entropy -in <iname> -out <outname> feature -fz <fuz-name> -in <iname> -out <outname> freqvar -in <iname> -out <outname> freqvec -in <iname> -out <outname> -meth <method> grayhst -in <iname> -out <outname> idim -in <iname> -out <outname> idm -in <iname> -out <outname> -lambda <lval> -kappa <kval> loadm -in <iname> -out <outname> mmax -in <iname> -out <outname> pixeldata -dout <iname> [-gray <graylevel>] savem -in <iname> -out <outname> shiftspec -in <iname> -out <outname> splitvec -in <iname> -out <outname> -len <len> stripfirst -f <field> textures -in <iname> -out <outname> thresval -in <iname> -out <outname> visualcom -in <iname> -out <outname> [-scale]
Textual data processing

3d2str -d <prob-matr> -fout <str-value> [-avg <avg-len>] - Convert a 3-D conditional probability matrix into a string of characters cldoc2www -td <textdata> -sd <sentdata> -skey <sentkeys> -wind <word_inds> -sbind <sent_inds> -cl <class> -o <outfile> [-qd <querydata> -qind <query_inds> -text <header> -color] - List documents as web page with content highlighting

codeprob -f <str-fld> -dout <codes> [-aout <avg-fld>] - Code a string field into a 2-D probability matrix for SOM training codesent -c1 <cldata1> -c2 <cldata2> -dout <codes> [-bin -step] - Code the sentences of some text data using neuron indexes of a word SOM. Each class of <cldata1> specifies one sentence, and <cldata2> is one layer of a word map. The result can be binary or gradually descending, which also indicates word order codetext -f <str-fld> -dout <codes> [-split | -prob] - Code a string field into SOM training data. -split and -prob provide different coding methods descand -f <str-fld> [-fout <strs-out>] - Remove Scandinavian alphabet from a field of strings. If < strs-out> is specified, the data is copied into a new field fihyph -f <str-fld> -fout <strs-out> - Hyphenate the strings of the given field using the rules in the Finnish language idf -d <datain> -fout <idfout> [-dout <dataout>] - Calculate inverse document frequencies and possibly scale data instext -dout <dataout> -text <str1> <str2> ... <strn>; [-sen] - Code a string specified on the command line into a string field loadtext -dout <dataout> -astxt <fldnum> -sep <asciinum> [-asis <fnums> -aout <asis-out> -sen] - Load a text file into a word data frame (and possibly store some document data, too) pd2cld -d <prob-matr> -cout <cldata> [-avg <avg-len>] - Convert any conditional probability matrix into a classification prob2str -d <prob-matr> -fout <str-value> [-avg <avg-len>] - Convert a conditional probability matrix into a string of characters scalecod -d <datain> [-range <rangeval> -base <baseval> -maxout <max_out_fld> -dout <dataout>] - Scale codes into specified range <baseval> ...<baseval> + <rangeval> text3dprob -f <str-fld> -dout <prob-matr> [-aout <avg-fld>] - Calculate a 3-D conditional probability matrix indicating how characters follow each

other within the words of a string field. Two previous characters are taken into account textprob -f <str-fld> -dout <prob-matr> [-aout <avg-fld>] - Calculate conditional probability matrix indicating how characters follow each other within the words of a string field tolower -f <str-fld> [-fout <strs-out>] - Converts the strings in the given field into lowercase characters weight2str -d <codes> -fout <strs-out> - Convert a default or -prob text training data or the weights of a trained SOM into strings
Probabilistic calculation

complexity -d <prob-matr> -fout <compl-value> -acc <accuracy> - Calculate the amount of bits needed to represent some data using a specified accuracy condent -d <prob-matr> -fout <ent-value> - Calculate the entropy of a conditional probability matrix condprob -f <intfld> -dout <prob-matr> [-c <cldata> -aout<avg-fld>] - Calculate conditional probability matrix indicating how integers follow each other within a field. The order of the integers can also be specified as a classification, in which case the beginning and end of each class is noted difference -p <prob-matr1> -q <prob-matr2> -fout <diff-value> [-acc <accuracy>] - Calculate the Kullback-Leibler difference of two probability distributions evalkern -f <fldin> -k <kernels> -fout <kern-est> - Evaluate kernel estimates for the points in < fldin> kernel -d <datain> -dout <kernels> -nkern <num-kernels> - Fit <num-kernels> gaussian kernels into input data modelcomp -s <som> -d <datain> -c <som-cld> -dout <results> [-acc <accuracy> -pinf <pin-fld> -cbook -int] - Evaluate the model complexities of a TS-SOM representation of some original data

using a specified accuracy or histogramming with specified number of pins. The results can be calculated as true bits ( -int) or fractions of bits optacc -d <datain> -fout <pin-fld> [-s <som> -c <som-cld> -acc <accuracy> -files -cbook] - Optimize representation accuracy for data and, if a TS-SOM and SOM classification are specified, SOM + residuals for each layer of TS-SOM probent -d <prob-matr> -fout <ent-value> - Calculate the entropy of a simple probability matrix viewpd -s <som> -d <datain> -c <som-cld> [-dhisto <datahisto> -shisto <somhisto> -rhisto <residuals>] - Obtain histograms from data, SOM and residuals (data - SOM neuron)
Socket communication

mok -d <data> idlist -d <data> {send | sendb} -id <rec_id> {-d <data> | -c <cldata> | -f <field> | -m <macro> | -i <image> | -x <matrix>} -sout <stat_fld> {receive | receiveb} -id <src_id> -sout <stat_fld> -idout <id_fld> -nout <name_fld> -tout <type_fld> remoteinit -d <connect_data> -id <my_id> -p <my_port> -sout <stat_fld> remoteend -d <connect_data> -id <my_id> -p <my_port> -sout <stat_fld>