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Technical Bulletin

Wizard Plus SV Minipreps DNA Purification System


INSTRUCTIONS FOR USE OF PRODUCTS A1270, A1330, A1340, A1460 AND A1470.

PRINTED IN USA. Revised 12/10

Part# TB225

Wizard Plus SV Minipreps DNA Purification System


All technical literature is available on the Internet at: www.promega.com/tbs/ Please visit the web site to verify that you are using the most current version of this Technical Bulletin. Please contact Promega Technical Services if you have questions on use of this system. E-mail: techserv@promega.com.

1. Description ..........................................................................................................1 2. Product Components and Storage Conditions ............................................3 3. Protocols ..............................................................................................................4
A. Preparation of E. coli ............................................................................................4 B. Production of a Cleared Lysate..........................................................................5 C. Plasmid DNA Isolation and Purification Protocols ........................................5

4. Supplementary Information ............................................................................8


A. B. C. D. Selection and Preparation of Plasmids and E. coli Strains .............................8 Choosing a Bacterial Strain .................................................................................8 Use of Alkaline Protease ...................................................................................10 Considerations for Automated Fluorescent Sequencing..............................10

5. Troubleshooting ...............................................................................................11 6. Composition of Buffers and Solutions .......................................................14 7. References .........................................................................................................14 8. Related Products ..............................................................................................15 1. Description

The Wizard Plus SV Minipreps DNA Purification System(a,b) provides a simple, reliable method for rapid isolation of plasmid DNA (Figure 1). The entire miniprep procedure can be completed in 30 minutes or less, depending on the number of samples processed. This system can be used to isolate any plasmid from E. coli hosts but works most efficiently when the plasmid is less than 20,000bp in size. Purified plasmids can be used without further manipulation for automated fluorescent DNA sequencing as well as for other standard molecular biology techniques. When used for in vitro transcription reactions, the isolated plasmid DNA should be supplemented with a ribonuclease inhibitor such as Recombinant RNasin Ribonuclease Inhibitor (Cat.# N2511). The protocol presented in this Technical Bulletin is for isolation of plasmid DNA from E. coli. Plasmid DNA can be purified from 110ml overnight cultures with the Wizard Plus SV Minipreps DNA Purification System. Plasmid yield will vary depending on a number of factors, including culture volume, plasmid copy number, type of culture medium and the bacterial strain used.
Promega Corporation 2800 Woods Hollow Road Madison, WI 53711-5399 USA Toll Free in USA 800-356-9526 Phone 608-274-4330 Fax 608-277-2516 www.promega.com
Printed in USA. Revised 12/10 Part# TB225 Page 1

Overnight culture Centrifuge.

Remove culture media. Resuspend cells. Lyse cells. Neutralize.

Clear lysate.

Transfer lysate.

Bind DNA.

Wash, removing solution by centrifugation or vacuum.

Elute plasmid DNA.


1581MA09_9A

Transfer Spin Column to a Collection Tube. Centrifuge.

Figure 1. Flow diagram of plasmid DNA isolation and purification using the Wizard Plus SV Minipreps DNA Purification System.

Promega Corporation 2800 Woods Hollow Road Madison, WI 53711-5399 USA Toll Free in USA 800-356-9526 Phone 608-274-4330 Fax 608-277-2516 www.promega.com
Part# TB225 Page 2 Printed in USA. Revised 12/10

2.

Product Components and Storage Conditions

Product Size Cat.# Wizard Plus SV Minipreps DNA Purification System (with Vacuum Adapters) 50 preps A1340 Each system contains sufficient reagents for 50 isolations from 110ml of culture. Includes: 20ml 20ml 30ml 20ml 50 50 550l 13ml 20 Cell Resuspension Solution (CRA) Cell Lysis Solution (CLA) Neutralization Solution (NSB) Column Wash Solution (CWA) Wizard SV Minicolumns Collection Tubes (2ml) Alkaline Protease Solution Nuclease-Free Water Vacuum Adapters

Product Size Cat.# Wizard Plus SV Minipreps DNA Purification System (with Vacuum Adapters) 250 preps A1470 Each system contains sufficient reagents for 250 isolations from 110ml of culture. Includes: 75ml 75ml 100ml 100ml 250 250 2,700l 25ml 20 Cell Resuspension Solution (CRA) Cell Lysis Solution (CLA) Neutralization Solution (NSB) Column Wash Solution (CWA) Wizard SV Minicolumns Collection Tubes (2ml) Alkaline Protease Solution Nuclease-Free Water Vacuum Adapters

Product Wizard Plus SV Minipreps DNA Purification System

Size Cat.# 50 preps A1330 250 preps A1460 Note: Cat.# A1330 and A1460 contain the same components as Cat.# A1340 and A1470, respectively, but do not include Vacuum Adapters.

Product Size Cat.# Wizard Plus SV Minipreps DNA Purification System, Trial Size 10 preps A1270 Each system contains sufficient reagents for 10 isolations from 110ml of culture (including Vacuum Adapters).

Storage and Stability: Store all Wizard Plus SV Minipreps components at room temperature (1530C). Reagent expiration dates are listed on the product label.

Promega Corporation 2800 Woods Hollow Road Madison, WI 53711-5399 USA Toll Free in USA 800-356-9526 Phone 608-274-4330 Fax 608-277-2516 www.promega.com
Printed in USA. Revised 12/10 Part# TB225 Page 3

3.

Protocols

Do not exchange or replace components of the Wizard Plus SV Minipreps DNA Purification System with components from any other Wizard Plus System. Components from the Wizard Plus and Wizard Plus SV Systems are not interchangeable. Materials to Be Supplied by the User (Solution compositions are provided in Section 6.) LB agar plates containing antibiotic LB medium containing antibiotic ethanol (95%) microcentrifuge capable of 14,000 g sterile 1.5ml microcentrifuge tubes centrifuge capable of 10,000 g Prior to using a new Wizard Plus SV Minipreps DNA Purification System, dilute the provided Column Wash Solution (CWA) as follows: Add 7ml of 95% ethanol for a final volume of 11ml for the 10-prep system (Cat.# A1270). Add 35ml of 95% ethanol for a final volume of 55ml for the 50-prep system (Cat.# A1330 and A1340). Add 170ml of 95% ethanol for a final volume of 270ml for the 250-prep system (Cat.# A1460 and A1470).

3.A. Preparation of E. coli


1. Use a single, well-isolated colony from a fresh Luria-Bertani (LB) agar plate (containing antibiotic) to inoculate 110ml of LB medium (containing the same antibiotic). We recommend LB culture medium. Rich media, such as Terrific Broth, produce high cell densities that may overload the DNA purification system. 2. Incubate overnight (1216 hours) at 37C in a shaking incubator. Incubation time can be optimized to increase the plasmid DNA yield for a given culture volume. However, it has been observed that as a culture ages the DNA yield may begin to decrease due to cell death and lysis within the culture. Note: An A600 reading of 24 ensures that cells have reached the proper growth density for harvesting and plasmid DNA isolation. For high-copy-number plasmids, do not process more than 5ml of bacterial culture. If more than 5ml of culture is processed, the capacity of the Wizard SV Minicolumn will be exceeded and no increase in plasmid yield will be obtained. For low-copy-number plasmids, it may be necessary to process larger volumes of bacterial culture (up to 10ml) for recovery of sufficient DNA. Processing greater than 10ml of culture will lead to insufficient clearing of the bacterial lysate and thus increased contaminants in the plasmid DNA.
Promega Corporation 2800 Woods Hollow Road Madison, WI 53711-5399 USA Toll Free in USA 800-356-9526 Phone 608-274-4330 Fax 608-277-2516 www.promega.com
Part# TB225 Page 4 Printed in USA. Revised 12/10

3.B. Production of a Cleared Lysate Note: Throughout the remainder of this document, the supplied Cell Resuspension Solution (CRA), Cell Lysis Solution (CLA), Neutralization Solution (NSB) and Column Wash Solution (CWA) are referred to as Cell Resuspension Solution, Cell Lysis Solution, Neutralization Solution and Column Wash Solution, respectively. 1. Harvest 15ml (high-copy-number plasmid) or 10ml (low-copy-number plasmid) of bacterial culture by centrifugation for 5 minutes at 10,000 x g in a tabletop centrifuge. Pour off the supernatant and blot the inverted tube on a paper towel to remove excess media. 2. Add 250l of Cell Resuspension Solution and completely resuspend the cell pellet by vortexing or pipetting. It is essential to thoroughly resuspend the cells. If they are not already in a microcentrifuge tube, transfer the resuspended cells to a sterile 1.5ml microcentrifuge tube(s).

Note: To prevent shearing of chromosomal DNA, do not vortex after Step 2. Mix only by inverting the tubes. 3. Add 250l of Cell Lysis Solution and mix by inverting the tube 4 times (do not vortex). Incubate until the cell suspension clears (approximately 15 minutes). Note: It is important to observe partial clearing of the lysate before proceeding to addition of the Alkaline Protease Solution (Step 4); however, do not incubate for longer than 5 minutes. 4. Add 10l of Alkaline Protease Solution and mix by inverting the tube 4 times. Incubate for 5 minutes at room temperature.

Alkaline protease inactivates endonucleases and other proteins released during the lysis of the bacterial cells that can adversely affect the quality of the isolated DNA. Do not exceed 5 minutes of incubation with Alkaline Protease Solution at Step 4, as nicking of the plasmid DNA may occur. 5. Add 350l of Neutralization Solution and immediately mix by inverting the tube 4 times (do not vortex). 6. Centrifuge the bacterial lysate at maximum speed (around 14,000 g) in a microcentrifuge for 10 minutes at room temperature.

3.C. Plasmid DNA Isolation and Purification Protocols The Wizard Plus SV Minipreps DNA Purification System allows a choice of methods for purification of plasmid DNA when systems with Vacuum Adapters are purchased (Cat.# A1340, A1470). Plasmid DNA may be purified from the bacterial lysate using microcentrifugation to force the cleared lysate through the Wizard SV Minicolumn and wash the plasmid DNA. Alternatively, a vacuum can be used to pull the lysate through the Spin Column and wash the plasmid DNA. Vacuum Adapters allow the use of a vacuum manifold (e.g., a Vac-Man Laboratory Vacuum Manifold) and vacuum source for DNA purification.
Promega Corporation 2800 Woods Hollow Road Madison, WI 53711-5399 USA Toll Free in USA 800-356-9526 Phone 608-274-4330 Fax 608-277-2516 www.promega.com
Printed in USA. Revised 12/10 Part# TB225 Page 5

Centrifugation Protocol Prepare plasmid DNA purification units by inserting one Spin Column into one 2ml Collection Tube for each sample. 1. Transfer the cleared lysate (approximately 850l, Section 3.B, Step 6) to the prepared Spin Column by decanting. Avoid disturbing or transferring any of the white precipitate with the supernatant. Note: If the white precipitate is accidentally transferred to the Spin Column, pour the Spin Column contents back into a sterile 1.5ml microcentrifuge tube and centrifuge for another 510 minutes at maximum speed. Transfer the resulting supernatant into the same Spin Column that was used initially for this sample. The Spin Column can be reused but only for this sample. 2. Centrifuge the supernatant at maximum speed in a microcentrifuge for 1 minute at room temperature. Remove the Spin Column from the tube and discard the flowthrough from the Collection Tube. Reinsert the Spin Column into the Collection Tube. Add 750l of Column Wash Solution, previously diluted with 95% ethanol, to the Spin Column. Centrifuge at maximum speed in a microcentrifuge for 1 minute at room temperature. Remove the Spin Column from the tube and discard the flowthrough. Reinsert the Spin Column into the Collection Tube. Repeat the wash procedure using 250l of Column Wash Solution. Centrifuge at maximum speed in a microcentrifuge for 2 minutes at room temperature. Transfer the Spin Column to a new, sterile 1.5ml microcentrifuge tube, being careful not to transfer any of the Column Wash Solution with the Spin Column. If the Spin Column has Column Wash Solution associated with it, centrifuge again for 1 minute at maximum speed. Transfer the Spin Column to a new, sterile 1.5ml microcentrifuge tube. Elute the plasmid DNA by adding 100l of Nuclease-Free Water to the Spin Column. Centrifuge at maximum speed for 1 minute at room temperature in a microcentrifuge. After eluting the DNA, remove the assembly from the 1.5ml microcentrifuge tube and discard the Spin Column. DNA is stable in water without addition of a buffer if stored at 20C or below. DNA is stable at 4C in TE buffer. To store the DNA in TE buffer, add 11l of 10X TE buffer to the 100l of eluted DNA. Do not add TE buffer if the DNA is to be used for automated fluorescent sequencing. Cap the microcentrifuge tube and store the purified plasmid DNA at 20C or below.

3. 4.

5. 6. 7.

8. 9.

10. 11.

12.

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Part# TB225 Page 6 Printed in USA. Revised 12/10

Vacuum Protocol Attach one Vacuum Adapter with Luer-Lok fitting to one port of the manifold (e.g., a Vac-Man Laboratory Vacuum Manifold). Insert a Spin Column into the Vacuum Adapter until snugly in place. 1. Transfer the cleared lysate (approximately 850l, Section 3.B, Step 6) to the prepared Spin Column by decanting. Avoid disturbing or transferring any of the white precipitate with the supernatant. Note: If the white precipitate is accidentally transferred to the Spin Column, pour the Spin Column contents back into a sterile 1.5ml microcentrifuge tube and centrifuge for another 510 minutes at maximum speed. Transfer the resulting supernatant into the same Spin Column that was used initially for this sample. The Spin Column can be reused but only for this sample. 2. Apply a vacuum of at least 15 inches of mercury (Hg) to pull the liquid through the Spin Column. When all liquid has been pulled through the column, release the vacuum. Add 750l of the Column Wash Solution, previously diluted with 95% ethanol, to the Spin Column. Apply a vacuum to pull the Column Wash Solution through the Spin Column. When all the liquid has been pulled through the Spin Column, release the vacuum. Comparison of Inches of Hg to Other Pressure Measurements. 15 Inches Hg 50.8kPa 381Torr 0.501atm 7.37psi 38.1cm Hg 508mbar

3. 4.

5. 6. 7.

Repeat the wash procedure using 250l of Column Wash Solution. Apply a vacuum to pull the liquid through the Spin Column. Dry the Spin Column by applying a vacuum for 10 minutes. Turn off the vacuum and transfer the Spin Column to a 2ml Collection Tube. Centrifuge at maximum speed for 2 minutes to remove any residual Column Wash Solution. Discard the 2ml Collection Tube and any liquid collected during this step. Transfer the Spin Column to a new, sterile 1.5ml microcentrifuge tube. Elute the plasmid DNA by adding 100l of Nuclease-Free Water to the Spin Column. Centrifuge at maximum speed for 1 minute at room temperature in a microcentrifuge. After eluting the DNA, remove the assembly from the 1.5ml microcentrifuge tube and discard the Spin Column. DNA is stable in water without addition of a buffer if stored at 20C or below. DNA is stable at 4C in TE buffer. To store the DNA in TE buffer, add 11l of 10X TE buffer to the 100l of eluted DNA. Do not add TE buffer if the DNA is to be used for automated fluorescent sequencing. Cap the microcentrifuge tube and store the purified plasmid DNA at 20C or below.

8. 9.

10. 11.

12.

Promega Corporation 2800 Woods Hollow Road Madison, WI 53711-5399 USA Toll Free in USA 800-356-9526 Phone 608-274-4330 Fax 608-277-2516 www.promega.com
Printed in USA. Revised 12/10 Part# TB225 Page 7

4.

Supplementary Information

4.A. Selection and Preparation of Plasmids and E. coli Strains Plasmid DNA can be purified from overnight cultures of E. coli with the Wizard Plus SV Minipreps DNA Purification System. The yield of plasmid will vary depending on a number of factors, including the plasmid copy number, cell density of bacterial culture, type of culture medium and bacterial strain used. Plasmid copy number is an important factor affecting DNA yield. Copy number is determined primarily by the region of DNA surrounding and including the origin of replication. This region, known as the replicon, controls replication of plasmid DNA by bacterial enzyme complexes. Some DNA sequences, when inserted into a particular plasmid, can lower the copy number of the plasmid by interfering with replication. Choose a single, well-isolated colony from a fresh Luria-Bertani (LB) agar plate (containing antibiotic) and use the colony to inoculate 110ml of LB media (also containing antibiotic). The inoculated medium should be incubated overnight (1216 hours) at 37C. An A600 of 2.04.0 for high-copy-number plasmids ensures that bacteria have reached the proper growth density for harvesting and plasmid DNA isolation. 4.B. Choosing a Bacterial Strain Endonuclease I is a 12kDa periplasmic protein that degrades double-stranded DNA. This protein is encoded by the gene endA. The E. coli genotype endA1 refers to a mutation in the wildtype endA gene, which produces an inactive form of the nuclease. E. coli strains with this mutation are referred to as EndA. Table 1 contains a list of EndA and EndA+ E. coli strains. The absence of endA1 (or endA) in an E. coli genotype denotes the presence of the wildtype gene, which expresses an active endonuclease I. The wildtype is indicated as EndA+. Using the Wizard Plus SV Minipreps DNA Purification System, high-quality DNA is easily obtained from both EndA+ and EndA strains. However, some EndA+ strains can be problematic for a number of applications. In general, we recommend the use of EndA strains whenever possible, particularly for applications such as automated fluorescent sequencing. For applications such as fluorescent DNA sequencing, special considerations should be given to the selection of plasmid and E. coli strains to optimize yield and plasmid quality. Optimal automated fluorescent sequencing results are obtained by using high-copy-number plasmids and EndA strains of E. coli for plasmid propagation.

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Part# TB225 Page 8 Printed in USA. Revised 12/10

Table 1. EndA and EndA+ Strains of E. coli. EndA BJ5183 DH1 DH20 DH21 DH5 JM103 JM105 JM106 JM107 JM108 JM109 MM294 SK1590 SK1592 SK2267 SRB TOP10 XL1-Blue XLO EndA+ BL21(DE3) CJ236 HB101 JM83 JM101 JM110 LE392 MC1061 NM522 (all NM series strains are EndA+) NM554 P2392 PR700 (all PR series strains are EndA+) Q358 RR1 TB1 TG1 Y1088 (all Y10 series strains are EndA+) BMH 71-18 ES1301

Promega Corporation 2800 Woods Hollow Road Madison, WI 53711-5399 USA Toll Free in USA 800-356-9526 Phone 608-274-4330 Fax 608-277-2516 www.promega.com
Printed in USA. Revised 12/10 Part# TB225 Page 9

4.C. Use of Alkaline Protease To improve the quality of plasmid DNA isolated from both EndA+ and EndA strains of E. coli, the Wizard Plus SV Minipreps DNA Purification System includes an alkaline protease solution. Alkaline protease, originally identified as subtilisin Carlsberg, is isolated from the bacterium Bacillus licheniformis (1). Approximately 250g are added per sample at the end of the lysis step during the preparation of a cleared bacterial lysate to inactivate endonucleases. The alkaline protease also acts to nonspecifically degrade proteins, thus reducing the overall level of protein contaminants in the cleared bacterial lysate (2,3). Alkaline protease is useful in this procedure, because it is optimally active at pH 9 and above, the conditions present during the alkaline lysis procedure. When the lysate is neutralized, alkaline protease activity is substantially reduced (4,5). The DNA prepared by this procedure has been tested extensively in a range of molecular biology applications including fluorescent sequencing, restriction enzyme digestion and cloning. 4.D. Considerations for Automated Fluorescent Sequencing For the application of automated fluorescent sequencing, special consideration should be given to the selection of plasmid type and E. coli strain to optimize yield and plasmid quality. Note: Optimal automated fluorescent sequencing results are routinely obtained by using high-copy-number plasmids and EndA strains of E. coli. Purified plasmid DNA must be within the proper concentration range for successful automated cycle sequencing (ideally 0.2g/l and not less than 0.1g/l). When working with DNA from low-copy-number plasmids, we strongly recommend that DNA concentration be determined by agarose gel/ethidium bromide quantitation prior to any application (6). DNA quantitation by spectrophotometric methods is prone to errors and requires a large amount of sample. The Wizard Plus SV Minipreps System routinely yields 3.55.0g of plasmid DNA when using a pGEM Vector and DH5 cells in 1.5ml of LB medium. For low-copy-number plasmids, a larger culture volume is required to obtain sufficient DNA for sequencing. Typical low-copy-number plasmid yields are 1.53.0g of plasmid DNA from 10ml of LB culture medium using the pALTER-1 Vector and DH5 cells. Special Considerations for Sequencing Using BigDye Chemistry The Wizard Plus SV Minipreps System yields template suitable for use in a number of fluorescent dye sequencing methods, including BigDye terminator reactions (Applied Biosystems). When performing dilutions of the BigDye terminator-ready reaction mix, it is essential to dilute the reaction mix using the appropriate dilution buffer (250mM Tris-HCl [pH 9.0], 10mM MgCl2).
Promega Corporation 2800 Woods Hollow Road Madison, WI 53711-5399 USA Toll Free in USA 800-356-9526 Phone 608-274-4330 Fax 608-277-2516 www.promega.com
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When using high-copy-number plasmids, over 500 bases of readable sequence can be obtained from terminator-ready reaction mixes diluted as much as sixfold. Table 2 outlines the amount of terminator-ready reaction mix and dilution buffer required to obtain the appropriate dilution for BigDye terminator reactions. For details on running these reactions, please refer to the protocol supplied with the BigDye terminator system. For each reaction, add the reagents in Table 2 to a separate tube. Table 2. Appropriate Dilutions for BigDye Terminator Reactions. Component terminator-ready reaction mix* double-stranded plasmid DNA template primer dilution buffer** Nuclease-Free Water to a final volume of No Dilution 8.0l 200500ng 3.2pmol 0l 20l Amount 1:2 4.0l 200500ng 3.2pmol 2.0l 20l 1:4 2.0l 200500ng 3.2pmol 3.0l 20l 1:6 1.3l 200500ng 3.2pmol 3.4l 20l

*Terminator-ready reaction mix is a 2.5X solution. **Dilution buffer is a 5X solution.

5.

Troubleshooting

For questions not addressed here, please contact your local Promega Branch Office or Distributor. Contact information available at: www.promega.com. E-mail: techserv@promega.com

Symptoms Poor cell lysis

Causes and Comments Too many bacterial cells. Use cultures grown to an A600 of 24. All media should contain an antibiotic. Use only recommended culture volumes for low- and high-copy-number plasmids (10ml maximum for low-copy-number and 5ml maximum for high-copy-number plasmids). Poor resuspension of bacterial cell pellet. Thoroughly resuspend cell pellets prior to cell lysis. Vortex or pipet pellet with Cell Resuspension Solution. No cell clumps should be visible after resuspension.

Promega Corporation 2800 Woods Hollow Road Madison, WI 53711-5399 USA Toll Free in USA 800-356-9526 Phone 608-274-4330 Fax 608-277-2516 www.promega.com
Printed in USA. Revised 12/10 Part# TB225 Page 11

5.

Troubleshooting (continued)
Causes and Comments Ethanol was not added to Column Wash Solution. Prepare the Column Wash Solution as instructed in Section 3 before beginning the procedure. Inaccurate quantitation of plasmid DNA yield. Quantitate plasmid DNA yield via agarose gel/ethidium bromide electrophoresis. DNA floats out of the wells during gel loading. Be certain to allow the full ten minutes for drying (with vacuum protocol) after the final wash step to allow evaporation of any remaining ethanol. Increase loading dye concentration. Low-copy-number plasmid used. Use a highcopy-number plasmid.

Symptoms No plasmid DNA purified

Low plasmid DNA yields

Overgrowth of bacterial culture by nontransformed cells. Make certain that antibiotics are used in all media, both liquid and solid. Bacterial culture too old. Inoculate antibioticcontaining media with a freshly isolated bacterial colony from an overnight plate. Incubate at 37C for 1216 hours. Low-copy-number plasmid used. Know the copy number of plasmid used; we recommend use of high-copy-number plasmids. Plasmid DNA yield not accurately quantitated. Use agarose gel/ethidium bromide quantitation. Do not rely on spectrophotometric measurement.

Nicking of plasmid DNA

Overincubation during alkaline lysis. Do not exceed 5 minutes incubation with either Cell Lysis Solution or Alkaline Protease. Too little DNA added to the sequencing reaction. Inoculate fresh LB medium with a newly isolated E. coli colony. Purify plasmid DNA and quantitate by agarose gel/ethidium bromide electrophoresis. TE buffer was used for DNA elution. Repurify plasmid DNA and elute in Nuclease-Free Water. Plasmid concentration not accurately quantitated. Use ethidium bromide gel electrophoresis to accurately quantitate plasmid DNA.

Poor results with automated fluorescent sequencing

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Part# TB225 Page 12 Printed in USA. Revised 12/10

5.

Troubleshooting (continued)
Causes and Comments Concentration of restriction enzyme or digestion time need to be increased. Increase the amount of restriction enzyme or the length of incubation. Digest at the recommended temperature and in the optimal buffer for the restriction enzyme used. Ethanol precipitate the plasmid DNA to remove any salts that may have carried over. Vortexing or overmixing resulted in genomic DNA contamination. Do not vortex samples after addition of Cell Lysis Solution to prevent shearing of genomic DNA. Wrong reagents used. Make certain that Column Wash Solution has been diluted with ethanol before use. Note: Wizard Plus and Wizard Plus SV components are not interchangeable.

Symptoms No restriction digestion

Genomic DNA contamination

DNA yields on gel look low compared to spectrophotometric readings

Traces of contaminants may be present in the eluted DNA, which inflate spectrophotometer readings. Phenol:chloroform extract and ethanol precipitate DNA, then wash with 70% ethanol before repeating readings. Quantitate DNA by agarose gel/ethidium bromide electrophoresis for the most accurate results.

Promega Corporation 2800 Woods Hollow Road Madison, WI 53711-5399 USA Toll Free in USA 800-356-9526 Phone 608-274-4330 Fax 608-277-2516 www.promega.com
Printed in USA. Revised 12/10 Part# TB225 Page 13

6.

Composition of Buffers and Solutions


Neutralization Solution (NSB) 4.09M 0.759M 2.12M guanidine hydrochloride potassium acetate glacial acetic acid 250mM 10mM Tris-HCl (pH 9.0) MgCl2 Tris-HCl (pH 7.5) EDTA casein peptone yeast extract NaCl agar (for plates only)

5X dilution buffer

10X TE buffer 100mM 10mM LB medium 10g 5g 5g 15g

Final pH is approximately 4.2. Column Wash Solution (CWA) 162.8mM 22.6mM 0.109mM potassium acetate Tris-HCl (pH 7.5) EDTA (pH 8.0)

Dissolve in 1L of distilled water. Autoclave and cool to 55C before adding antibiotic. Cell Lysis Solution (CLA) 0.2M 1% 50mM 10mM 100g/ml NaOH SDS Tris-HCl (pH 7.5) EDTA RNase A

Add 35ml of 95% ethanol for the 50prep system (170ml for the 250-prep system, 7ml for the 10-prep system) as described in Section 3. Final concentrations will be approximately 60% ethanol, 60mM potassium acetate, 8.3mM Tris-HCl, 0.04mM EDTA.

Cell Resuspension Solution (CRA)

7.

References
1. Guntelberg, A.V. and Otteson, M. (1954) Purification of the proteolytic enzyme from Bacillus subtilis. Compt. Rend. Trav. Lab. Carlsberg 29, 3648. 2. Aehle, W. et al. (1993) Rational protein engineering and industrial application: Structure prediction by homology and rational design of protein-variants with improved washing performancethe alkaline protease from Bacillus alcalophilus. J. Biotechnol. 28, 3140. 3. von der Osten, C. et al. (1993) Protein engineering of subtilisins to improve stability in detergent formulations. J. Biotechnol. 28, 5568. 4. Vetter, R. et al. (1994) Highly alkaline proteases. U.S. Pat. No. 5,352,603. (October 4, 1994). 5. Shetty, J.K., Patel, C.P. and Nicholson, M.A. (1995) Method of preparation of purified alkaline protease. U.S. Pat. No. 5,439,817. (August 8, 1995). 6. Kahn, M. et al. (1979) Plasmid cloning vehicles derived from plasmids ColE1, F, R6K, and RK2. Meth. Enzymol. 68, 26880.

Promega Corporation 2800 Woods Hollow Road Madison, WI 53711-5399 USA Toll Free in USA 800-356-9526 Phone 608-274-4330 Fax 608-277-2516 www.promega.com
Part# TB225 Page 14 Printed in USA. Revised 12/10

8.

Related Products
Cat.# A1441 A2250 A2255 A2258 A7231 A7660 A2291 A1331 A2492 A2495

Product Alkaline Protease Solution Wizard SV 96 Plasmid DNA Purification System

Size 3ml 1 96 preps 5 96 preps Wizard SV 9600 Plasmid DNA Purification System 100 96 preps Vac-Man Laboratory Vacuum Manifold 20-sample capacity 2-sample capacity Vac-Man 96 Vacuum Manifold 96-well capacity Vacuum Adapters 20 each PureYield Plasmid Midiprep System 25 preps 100 preps

(a)Australian Pat. No. 730718, Singapore Pat. No. 64532 and Korean Pat. No. 486402 have been issued to Promega Corporation

for an improved filtration system and method. Other patents are pending.
(b)U.S. Pat. No. 5,981,235, Australian Pat. No. 729932 and European Pat. No. 0 918 877 have been issued to Promega Corporation for methods for isolating nucleic acids using alkaline protease. Other patents are pending.

2010 Promega Corporation. All Rights Reserved. pALTER, pGEM, RNasin, Vac-Man and Wizard are registered trademarks of Promega Corporation. PureYield is a trademark of Promega Corporation. BigDye is a registered trademark of Applera Corporation. DH5 is a trademark of Life Technologies, Inc. Luer-Lok is a registered trademark of Becton, Dickinson and Company. Products may be covered by pending or issued patents or may have certain limitations. Please visit our web site for more information. All prices and specifications are subject to change without prior notice. Product claims are subject to change. Please contact Promega Technical Services or access the Promega online catalog for the most up-to-date information on Promega products.

Promega Corporation 2800 Woods Hollow Road Madison, WI 53711-5399 USA Toll Free in USA 800-356-9526 Phone 608-274-4330 Fax 608-277-2516 www.promega.com
Printed in USA. Revised 12/10 Part# TB225 Page 15

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