http://en.wikipedia.org/wiki/Genome_instability
Genome instability
From Wikipedia, the free encyclopedia
Genome instability (also genetic instability or genomic instability) refers to a high frequency of mutations within the genome of a cellular lineage. These mutations can include changes in nucleic acid sequences, chromosomal rearrangements or aneuploidy. Genome instability is central to carcinogenesis[1] but also is a factor in some neurodegenerative diseases such as amyotrophic lateral sclerosis or the neuromuscular disease myotonic dystrophy. The sources of genome instability have only recently begun to be elucidated. A high frequency of externally caused DNA damage[2] can be one source of genome instability since DNA damages can cause inaccurate translesion synthesis past the damages or errors in repair, leading to mutation. Another source of genome instability may be epigenetic reductions in expression of DNA repair genes. Because endogenous (metabolically-caused) DNA damage is very frequent, occurring on average more than 10,000 times a day in the genomes of human cells, epigenetically reduced DNA repair is likely an important source of genome instability.
Contents
1 The usual genome situation 2 Genome instability in neuronal and neuromuscular disease 3 Genome instability in cancer 4 References
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handle the damage to DNA that this causes. Four of them (Huntingtons disease, various spinocerebellar ataxias, Friedreichs ataxia and myotonic dystrophy types 1 and 2) often have an unusual expansion of repeat sequences in DNA, likely attributable to genome instability. Four (ataxia-telangiectasia, ataxia-telangiectasia-like disorder, Nijmegen breakage syndrome and Alzheimers disease) are defective in genes involved in repairing DNA double-strand breaks. Overall, it seems that oxidative stress is a major cause of genomic instability in the brain. A particular neurological disease arises when a pathway that normally prevents oxidative stress is deficient, or a DNA repair pathway that normally repairs damage caused by oxidative stress is deficient.
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expression was deficient because its pairing partner MLH1 was repressed due to promoter methylation (PMS2 protein is unstable in the absence of MLH1).[16] The other 10 cases of loss of PMS2 expression were likely due to epigenetic overexpression of the microRNA, miR-155, which down-regulates MLH1.[17] In the article Epigenetics (see section DNA repair epigenetics in cancer), there is a partial listing of epigenetic deficiencies found in DNA repair genes in sporadic cancers. These include frequencies of between 13%-100% of epigenetic defects in genes BRCA1, WRN, FANCB, FANCF, MGMT, MLH1, MSH2, MSH4, ERCC1, XPF, NEIL1 and ATM located in cancers including breast, ovarian, colorectal and head and neck. Two or three epigenetic deficiencies in expression of ERCC1, XPF and/or PMS2 were shown to occur simultaneously in the majority of the 49 colon cancers evaluated.[18] Deficiencies in DNA repair genes cause increased mutation rates.[19][20][21] Also, chromosomal rearrangements and aneuploidy increase in humans defective in DNA repair gene BLM.[22] This indicates that deficiency in DNA repair causes genome instability.
References
1. ^ a b Schmitt MW, Prindle MJ, Loeb LA. (2012). Implications of genetic heterogeneity in cancer. Ann N Y Acad Sci 1267:110-116. doi: 10.1111/j.1749-6632.2012.06590.x. PMID 22954224 2. ^ Mller P. (2005). Genotoxicity of environmental agents assessed by the alkaline comet assay. Basic Clin Pharmacol Toxicol. 96 Suppl 1:1-42. Review. PMID 15859009 3. ^ Subba Rao K. (2007). Mechanisms of disease: DNA repair defects and neurological disease. Nat Clin Pract Neurol. 3(3):162-72. Review. PMID 17342192 4. ^ Jeppesen DK, Bohr VA, Stevnsner T. (2011). DNA repair deficiency in neurodegeneration. Prog Neurobiol. 94(2):166-200. doi: 10.1016/j.pneurobio.2011.04.013. Review. PMID 21550379 5. ^ Corcos, D. (2012), "Unbalanced replication as a major source of genetic instability in cancer cells", AJBR. 2 (3): 1609, PMC 3484411 (//www.ncbi.nlm.nih.gov/pmc/articles/PMC3484411), PMID 23119227 (//www.ncbi.nlm.nih.gov/pubmed/23119227) 6. ^ Storchova, Z.; Pellman, D. (2004), "From polyploidy to aneuploidy, genome instability and cancer", Nat Rev Mol Cell Biol. 5 (1): 4554, doi:10.1038/nrm1276 (http://dx.doi.org/10.1038%2Fnrm1276), PMID 14708009 (//www.ncbi.nlm.nih.gov/pubmed/14708009) 7. ^ Wood LD, Parsons DW, Jones S, Lin J, Sjblom T, Leary RJ, Shen D, Boca SM, Barber T, Ptak J, Silliman N, Szabo S, Dezso Z, Ustyanksky V, Nikolskaya T, Nikolsky Y, Karchin R, Wilson PA, Kaminker JS, Zhang Z, Croshaw R, Willis J, Dawson D, Shipitsin M, Willson JK, Sukumar S, Polyak K, Park BH, Pethiyagoda CL, Pant PV, Ballinger DG, Sparks AB, Hartigan J, Smith DR, Suh E, Papadopoulos N, Buckhaults P, Markowitz SD, Parmigiani G, Kinzler KW, Velculescu VE, Vogelstein B. (2007). The genomic landscapes of human breast and colorectal cancers. Science 318(5853):1108-13. PMID 17932254 8. ^ Nowak, M. A.; Komarova, N. L.; Sengupta, A.; Jallepalli, P.V.; Shih, I.M.; Vogelstein, B.; Lengauer, C. (2002), "The role of chromosomal instability in tumor initiation", Proc. Natl Acad. Sci. USA 99 (25): 1622631, doi:10.1073/pnas.202617399 (http://dx.doi.org/10.1073%2Fpnas.202617399), PMC 138593 (//www.ncbi.nlm.nih.gov /pmc/articles/PMC138593), PMID 12446840 (//www.ncbi.nlm.nih.gov/pubmed/12446840) 9. ^ Kinzler, K. W.; Vogelstein, B. (April 1997), "Cancer-susceptibility genes. Gatekeepers and caretakers", Nature 386 (6627): 7613, doi:10.1038/386761a0 (http://dx.doi.org/10.1038%2F386761a0), PMID 9126728 (//www.ncbi.nlm.nih.gov/pubmed/9126728) 10. ^ Cahill, D. P.; Kinzler, K. W.; Vogelstein, B.; Lengauer, C. (1999), "Genetic instability and darwinian selection in tumours", Trends Cell Biol. 9 (12): M57M60, doi:10.1016/S0168-9525(99)01874-0 (http://dx.doi.org /10.1016%2FS0168-9525%2899%2901874-0), PMID 10611684 (//www.ncbi.nlm.nih.gov/pubmed/10611684) 11. ^ Bernstein C, Prasad AR, Nfonsam V, Bernstein H. (2013). DNA Damage, DNA Repair and Cancer, New Research Directions in DNA Repair, Prof. Clark Chen (Ed.), ISBN: 978-953-51-1114-6, InTech, http://www.intechopen.com /books/new-research-directions-in-dna-repair/dna-damage-dna-repair-and-cancer 12. ^ Cunningham FH, Fiebelkorn S, Johnson M, Meredith C. A novel application of the Margin of Exposure approach: segregation of tobacco smoke toxicants. Food Chem Toxicol 2011;49(11) 2921-2933. PMID 21802474
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13. ^ Cuozzo C, Porcellini A, Angrisano T, Morano A, Lee B, Di Pardo A, Messina S, Iuliano R, Fusco A, Santillo MR, Muller MT, Chiariotti L, Gottesman ME, Avvedimento EV (2007). DNA damage, homology-directed repair, and DNA methylation. PLoS Genet 3(7):e110. PMID 17616978 14. ^ O'Hagan HM, Mohammad HP, Baylin SB. Double strand breaks can initiate gene silencing and SIRT1-dependent onset of DNA methylation in an exogenous promoter CpG island. PLoS Genet 2008;4(8) e1000155. PMID 18704159 15. ^ Gottschalk AJ, Timinszky G, Kong SE, Jin J, Cai Y, Swanson SK, Washburn MP, Florens L, Ladurner AG, Conaway JW, Conaway RC (2009). Poly(ADP-ribosyl)ation directs recruitment and activation of an ATP-dependent chromatin remodeler. Proc Natl Acad Sci U S A 106(33):13770-4. doi: 10.1073/pnas.0906920106. PMID 19666485 [PubMed - indexed for MEDLINE] PMCID: PMC2722505 16. ^ Truninger K, Menigatti M, Luz J, Russell A, Haider R, Gebbers JO, Bannwart F, Yurtsever H, Neuweiler J, Riehle HM, Cattaruzza MS, Heinimann K, Schr P, Jiricny J, Marra G. (2005). Immunohistochemical analysis reveals high frequency of PMS2 defects in colorectal cancer. Gastroenterology 128:1160-1171. PMID 15887099 17. ^ Valeri N, Gasparini P, Fabbri M, Braconi C, Veronese A, Lovat F, Adair B, Vannini I, Fanini F, Bottoni A, Costinean S, Sandhu SK, Nuovo GJ, Alder H, Gafa R, Calore F, Ferracin M, Lanza G, Volinia S, Negrini M, Mcllhatton MA, Amadori D, Fishel R, Croce CM: Modulation of mismatch repair and genomic stability by miR-155. Proc Natl Acad Sci USA 2010, 107:6982-6987. PMID 20351277 18. ^ Facista A, Nguyen H, Lewis C, Prasad AR, Ramsey L, Zaitlin B, Nfonsam V, Krouse RS, Bernstein H, Payne CM, Stern S, Oatman N, Banerjee B, Bernstein C. (2012). Deficient expression of DNA repair enzymes in early progression to sporadic colon cancer. Genome Integr. 3(1):3. doi: 10.1186/2041-9414-3-3. PMID 22494821 19. ^ Narayanan L, Fritzell JA, Baker SM, Liskay RM, Glazer PM. (1997). Elevated levels of mutation in multiple tissues of mice deficient in the DNA mismatch repair gene Pms2. Proc Natl Acad Sci U S A 94(7):3122-3127. PMID 9096356 20. ^ Hegan DC, Narayanan L, Jirik FR, Edelmann W, Liskay RM, Glazer PM. (2006). Differing patterns of genetic instability in mice deficient in the mismatch repair genes Pms2, Mlh1, Msh2, Msh3 and Msh6. Carcinogenesis. 2006 Dec;27(12):2402-2408. PMID 16728433 21. ^ Tutt AN, van Oostrom CT, Ross GM, van Steeg H, Ashworth A. (2002). Disruption of Brca2 increases the spontaneous mutation rate in vivo: synergism with ionizing radiation. EMBO Rep. 3(3):255-260. PMID 11850397 PMCID: PMC1084010 22. ^ German J. (1969). Bloom's syndrome. I. Genetical and clinical observations in the first twenty-seven patients. Am J Hum Genet. 1969 Mar;21(2):196-227. PMID 5770175 PMCID: PMC1706430
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