Original Russian Text © V. V. Sova, M. S. Pesentseva, A. M. Zakharenko, S. N. Kovalchuk, T. N. Zvyagintseva, 2013, published in Biokhimiya, 2013, Vol. 78, No. 7, pp. 962976.
REVIEW
Elyakov Pacific Institute of Bioorganic Chemistry, FarEastern Branch of the Russian Academy of Sciences,
pr. 100 let Vladivostoku 159, 690022 Vladivostok, Russia; Email: zvyag@piboc.dvo.ru
Received February 6, 2013
Revision received March 1, 2013
Abstract—This review discusses the catalytic properties, activity regulation, structure, and functions of Oglycoside hydro
lases from marine organisms exemplified by endo1→3βDglucanases of marine invertebrates.
DOI: 10.1134/S0006297913070079
Key words: glycosidases, Oglycoside hydrolases, endo1→3βDglucanases, catalytic properties, structure, transglycosy
lation, marine organisms
Glycosidases (EC 3.2.1 Oglycoside hydrolases) are sources of 1→3βDglucanases and of some other O
key enzymes of carbohydrate metabolism. They catalyze glycoside hydrolases [5]. Most frequently, these enzymes
cleavage of Oglycoside bonds in carbohydrates and car are found in digestive tracts of marine animals and occur
bohydratecontaining biopolymers. Although involved in in waste on their industrial processing.
complicated vital functions, Oglycosidases have a rela We performed a comparative analysis of the 1→3β
tively simple action mechanism and, therefore, can be Dglucanase activity in digestive organs of marine inver
used as a convenient model for studies on important tebrates inhabiting various regions of the World Ocean
problems of enzymology [1]. and have obtained a general picture of distribution of
these enzymes. 1→3βDGlucanases are widely distrib
uted in marine organisms, similarly to cellulases and
1→3βDGLUCANASES OF MARINE amylases in terrestrial organisms. The highest activity of
ORGANISMS AS OGLYCOSIDE HYDROLASES 1→3βDglucanases has been recorded in digestive
organs of marine mollusks and crustaceans [6].
1→3βDGlucanases (laminarinases) responsible for An active 1→3βDglucanase was found not only in
cleavage of Oglycoside bonds in 1→3βDglucans are a the digestive organs but also in unfertilized oocytes of the
special case among Oglycoside hydrolases. These enzymes majority of sea urchin species [7, 8]. This enzyme is local
are found in representatives of all kingdoms of Nature from ized in the cortical granules, and on fertilization the
archaebacteria to eukaryotes, where they are responsible for major part of the enzyme is released into the perivitelline
various functions [24]. In particular, 1→3βDglucanas space and the environmental seawater [9]. In some sea
es of bacteria are involved in degradation of polysaccha urchin species the enzyme reappears on the stage of gas
rides, which are used by the bacteria as a source of energy. trulation and larval development, and it functions already
In fungi, these enzymes perform lysis of their own cellular as a digestive enzyme. The role of 1→3βDglucanase in
matrix during cell development. In plants, these enzymes unfertilized oocytes is not established. It is supposed to be
are involved in cell differentiation, the system of plant involved in fertilization; however, endogenous 1→3βD
defense against pathogenic fungi, and degradation of the glucan (the enzyme substrate) has not been identified in
1→3βDglucan layer of the seed envelope during seed the fertilization envelope.
sprouting. 1→3βDGlucanases play an important role in Crystalline styles of bivalve mollusks are unique nat
the digestion and reproduction of marine invertebrates. ural accumulators of these enzymes: the contents of
Marine invertebrates include numerous taxons at 1→3βDglucanases in them are 5001000 times higher
different stages of evolution and different nutrition type than in other biological materials [5]. The crystalline style
and habit of life, and they are rich and relatively available is a glasslike rod inside the mollusk’s stomach. This style
contains absorbed digestive enzymes, which are released
* To whom correspondence should be addressed. into the intestine for extracellular digestion of food.
746
GLYCOSIDASES OF MARINE ORGANISMS 747
We have chosen crystalline styles of marine bivalve ecules: endo1→3βDglucanases (EC 3.2.1.39), which
mollusks as a source for isolation and investigation of require for the action at least two adjacent 1→3bound
1→3βDglucanases. Estimation of Oglycosidases in glucose residues, and less specific endo1→3βDglu
extracts of crystalline stalks revealed that 1→3βDglu canases (EC 3.2.1.6) that can hydrolyze even β1→4
canase was the major hydrolase. Activities of enzymes bonds near the β1→3, as it is in the lichenan molecule.
catalyzing such polysaccharides as amylopectin, CMcel Note that to assign endo1→3βDglucanase to one of
lulose, and pustulan were insignificant: from 0.2 to 6% these types, it is necessary to prove hydrolysis of the β
relative to the activity by laminaran. Other hydrolases, 1→4bond, i.e. to establish the structure of products of
such as lipases, proteinases, and nucleases, were not hydrolysis of a mixed (1→3);(1→4)βDglucan. Most
found in this organ [6]. frequently, no such proofs are presented, and endo1→3
The high concentration of 1→3βDglucanase in βDglucanases of marine invertebrates with similar
crystalline styles of mollusks allowed us to use simple properties and specificities are assigned to different types:
purification schemes with 23 stages for isolation of EC 3.2.1.6 [11, 12, 17, 18, 20] and EC 3.2.1.39 [13, 14,
enzymes, which were homogenous by SDSelectrophore 16].
sis data [1014]. Isolation of individual 1→3βDglu In terrestrial organisms, 1→3βDglucanases func
canases from the liver or gastric juice of marine mollusks tion as components of laminarinase complexes, possibly
was more difficult [1518]. for the more complete utilization of a polymeric sub
All studied 1→3βDglucanases from marine mol strate. Such complexes include endo/exoenzymes and
lusks are rather resistant to different influences (tempera glucosidases. Thus, a laminarinase complex isolated from
ture, pH, NaCl, organic solvents, denaturing agents), digestive organs of the terrestrial gastropod Eulota maakii
have pHoptimums in the slightly acidic region specific contained two endolaminarinases, exolaminarinase,
for 1→3βDglucanases from other sources, and rela and glucosidase [21]. It is interesting that crystalline styles
tively low molecular weight, from 32,000 to 40,000 Da. of marine mollusks contain “incomplete” laminarinase
The traditional classification of enzymes (EC) complexes; in the presence of endo1→3βDglucanas
adopted by IUPAC is based on the reaction catalyzed and es, they lack exo1→3βDglucanases and glycosidases.
the substrate specificity. This classification is generally The absence of exoenzymes is compensated by specific
adopted but has some limitations. It is difficult to use this features of the action of endo1→3βDglucanases of
system to compare reaction mechanisms. There are also crystalline styles: in products of laminaran hydrolysis by
other classifications available on the Internet: hierarchi them, there is a high content of glucose (from 40 to 60%)
cal classifications of protein structures (CATH, SCOP, and the hydrolysis depth of a substrate under the influ
DALI); database of protein domain families (Pfam); clas ence of endo1→3βDglucanases from marine organ
sifications based on the reactions catalyzed, action mech isms is 25 times higher than in the presence of the
anisms, and structural features of enzymes (RLCP, enzymes from terrestrial organisms [22, 23]. From the
SFLD); Varfolomeev’s hierarchical classification of cat liver of Littorina sitkana (= kurila), in addition to endo
alytic sites of hydrolases [19]; classification based on 1→3βDglucanase, we have isolated an unusual βD
homology of amino acid sequences of glycosidases glucosidase capable of catalyzing hydrolysis of laminaran.
(CAZy). Describing 1→3βDglucanases (laminarinas A similar enzyme was found in the digestive juice of the
es), authors commonly use the classification of IUPAC marine mollusk Aplysia kurodai, which was characterized
(EC) and the structural classification system (CAZy). by the authors as exo1→3βDglucanase manifesting
According to the EC nomenclature, the enzyme the βDglucosidase activity [18]. But it is not excluded
number (EC 3.2.1.21) is given to glycosidases, i.e. that this enzyme could be also most correctly assigned to
enzymes catalyzing hydrolysis of glucosides and also of βDglucosidase capable of catalyzing hydrolysis of lam
oligosaccharides. These enzymes can be considered as inaran. We have already mentioned that glucosidases are
oligosaccharide hydrolases, because an increase in the different from glucanases mainly by a decrease in the
polymerization degree of the substrate is associated with a hydrolysis rate of a substrate with increase in its polymer
decrease in the enzymatic hydrolysis rate, and polysaccha ization degree. These features were displayed by both
rides are not cleaved under the influence of such enzymes. enzymes. Note that enzymes with this specificity were
1→3βDGlucanases preferentially catalyzing hydrolysis earlier found only in the cell walls of plants [2426].
of polysaccharides (polysaccharide hydrolases) are subdi
vided into exo1→3βDglucanases (EC 3.2.1.58),
which successively cleave mono (less frequently di or SUBSTRATES OF 1→3βDGLUCANASES
oligosaccharides) from the nonreducing end of the glu
can molecule, and endo1→3βDglucanases, which Substrates of 1→3βDglucanases are 1→3βD
cleave internal glycosidic bonds in polymeric substrates. glucans and mixed 1→3;1→4 and 1→3;1→6βDglu
There are two types of endo1→3βDglucanases cans. As discriminated from functionally highly special
catalyzing hydrolysis of internal bonds of polymeric mol ized glucans, such as amylose (a reserve polysaccharide)
a b
or cellulose (structural polysaccharide), 1→3βDglu residue (Mchains) can be present, whereas other mole
cans are polyfunctional substances. They are components cules are terminated with a glucose residue (Gchains)
of cell walls of many plants and fungi [27, 28], are pro [41].
duced by some bacteria as exopolysaccharides [29, 30], Laminarans from various alga species are markedly
and are used as reserve substances by fungi of the different in both the ratio of 1,3/1,6bonds and the mode
Ascomycetes and Basidiomycetes genera [31, 32] and by of inclusion of these bonds in the β-D-glucan chain (Fig.
algae [33]. The heterogeneity of 1→3βDglucans is due 1). Laminarans from Laminaria hyperborea and
to differences in molecular weights and presence either of Turbinaria conoides, as well as a fraction of laminarans
β1,6 or of β1,4bonds, which are also different in con from Saccharina gurjanovae, are virtually linear 1→3β
tents and location in glucan molecules. Such 1→3 or Dglucans (Fig. 1a) [4042]. Such laminarans are “insol
mixed 1→3;1→6βDglucans as curdlan, zymosan, and uble” ones. Their content of 1,6bound residues of
a corpuscular βDglucan schizophillan are well known β-D-glucose is no more than 12%. Laminarans enriched
as immunomodulators, antitumor agents, and radiopro with 1,6bound residues of β-D-glucose are “soluble”.
tectors [34]. Laminarans from S. cichorioides and Costaria costata con
Laminarans (1→3 or 1→3;1→6βDglucans) are tain 1,6-bound glucose residues as singular branches from
the most traditional substrates for 1→3βDglucanases the major chain of 1→3βDglucan (ratio of bonds
(laminarinases), which have conditioned the trivial name 1,3/1,6 = 9 : 1 and 5 : 1, respectively) (Fig. 1c), whereas
of the enzymes. Laminarans are components of water laminaran from Fucus evanescens (ratio of bonds
soluble polysaccharides of brown algae and microalgae 1,3/1,6 = 2 : 1) contains in the branches at C6 both glu
considered as serving reserve substance. This function of cose and gentibiose residues [43, 44]. Laminarans from
laminarans seems to be not the only one, and not only Eisenia bicyclis are 1→3;1→6βDglucans characterized
laminarans are used as reserve substances, because many by a high content of 1,6bound glucose residues (ratio of
brown algae contain only a small amount of laminaran or bonds 1,3/1,6 = 3 : 1), which are present in this lami
do not contain it at all [35, 36]. The contents and struc naran as branches and as inclusions in the main chain
ture of laminarans depend on the algal species, develop (Fig. 1b) [45, 46]. Laminarans from Ishige okamurai and
ment stage, growth conditions, and season of the gather Chorda filum also include 1,6bound glucose residues in
ing of the algae [3739]. Laminarans are colorless amor the major chain of the laminaran along with branches at
phous substances without smell or taste. Two forms of position 6 (Fig. 1, b and c) [47, 48]. Finally, a polysac
laminarans are known to be different in solubility in cold charide from the microalga Emiliania huxleyi is 1→6β
water: “soluble” and “insoluble” ones. The solubility is Dglucan containing gentibiose residues as branches at
associated with structural features of the laminarans [40]. C3 (Fig. 1d) [49].
By chemical nature, laminarans are polysaccharides con Thus, in laminarans there are different combinations
sisting of βDglucose residues linked by 1,3 and/or 1,6 of 1,3- and 1,6-glycosidic bonds included in both the
bonds, with the polymerization degree of 2040, which major chain and branches of the molecules, and this
corresponds to molecular weight of 36 kDa. On the allows us to successfully use them for studies on the speci
reducing end of some laminaran molecules a mannitol ficity of 1→3βDglucanases [22].
SBS AC
SOVA et al.
a b
Fig. 3. Model of complex of the endo1→3βDglucanase from the bivalve mollusk M. yessoensis and halistanol sulfate in two projections (a,
b). The glucanase is presented as a ribbon diagram, catalytic residues are shown as spheres, and the ligand as a pivot [12].
stacking interaction of the tryptophan aromatic ring with important for stabilization of the molecules. In many
pyranose rings of glucose residues. The involvement of cases, thermostability of enzymes is determined by their
tryptophan residues in the enzyme–substrate interaction conformational mobility: the higher the conformational
of endo1→3βDglucanases from the mollusks S. sacha mobility of a protein molecule, the lower its thermosta
linensis, Ch. albidus, and M. yessoensis was shown earlier bility usually is [14]. In particular, the presence of disul
using a chemical modification approach [12, 64, 65]. fide bonds in the protein molecule macrostructure
Analysis of the multiple alignment of amino acid decreases conformational mobility. As published in work
sequences of endo1→3βDglucanases has revealed [14], the thermostability of endo1→3βDglucanases
two conserved histidine residues (Fig. 2). The importance of marine mollusks increases in the following series (bio
of histidine residues for the catalytic activity was con logical sources of the enzymes are indicated): Ch. albidus,
firmed by an approach of chemical modification for M. yessoensis, T. literata, S. sachalinensis, and P. viridis.
endo1→3βDglucanases from S. sachalinensis, M. These glucanases are different in the contents of cysteine
yessoensis, Ch. albidus, and Tenebrio molitor [12, 6567]. residues: the enzymes from the scallops Ch. albidus and
By Xray crystallographic analysis, one of histidine M. yessoensis have two cysteine residues, those from T. lit
residues was shown to be included in the active center of erata three, from S. sachalinensis four, and from P. viridis
endo1→3βDglucanase from Nocardiopsis spp. [59]. seven. The following regularity seems to exist: the higher
Based on studies on the threedimensional structure of κ the number of cysteine residues (and probably, of disul
carrageenase from the bacterium P. carrageenovora, it was fide bonds) in the endo1→3βDglucanase molecule,
supposed that the histidine residue together with the the higher is the enzyme thermostability.
aspartic acid residue of the active site GEIDIXE should Table 2 presents the distribution of endo and exo
be involved in the proton transfer during the deglycosyla 1→3βDglucanases in different taxons, and Table 3
tion stage [57]. shows the membership of these enzymes in the structural
Analysis of amino acid sequences of endo1→3β CAZy families. Obviously, the majority of known 1→3β
Dglucanases has shown that two cysteine residues are Dglucanases have the endotype of the action. Only
conserved in all endo1→3βDglucanases of mollusks fungi preferentially contain glucanases with the exotype
(Fig. 2). These residues seem to form a disulfide bond action. Note that in marine fungi, as discriminated from
Table 2. Distribution of 1→3βDglucanases with endo and exotype of action in different taxons
Eukaryotes:
animals 2 6 – 8/0
plants 7 228 10 235/10
fungi 41 32 143 73/143
Protozoa 2 36 4 38/4
Prokaryotes:
bacteria 44 135 34 179/34
Archae 4 2 – 6/0
Viruses – 1 – 1/0
Table 3. Distribution of 1→3βDglucanases with endo and exotype of action in families of Oglycoside hydrolases
according to the CAZy classification
GHF 3 – – 4 0/4
GHF 5 – – 20 0/20
GHF 16 13 48 – 64/0
GHF 17 – 75 2 75/2
GHF 55 – 4 20 4/20
GHF 64 – 3 – 3/0
GHF 81 – 12 – 12/0
invertebrates and bacteria, exo1→3βDglucanases βDglucans; nevertheless, the authors classified the
have also been found [68, 69]. enzyme as EC 3.2.1.58 and not as EC 3.2.1.6 [71]. Thus,
By homology of primary structure, 1→3βDglu the action type of these enzymes remains unclear.
canases are members of some families of Oglycoside
hydrolases (the CAZy classification): 3, 5, 16 (βjellyroll
structure), 17 ((β/α)8 structure), 55 (βhelix structure), TRANSGLYCOSYLATION
64, and 81. Thus, structural families 5 and 55 of CAZy
include only exoglucosidases (EC 3.2.1.58). The struc To date, investigation of Oglycoside hydrolases from
tural family 17 of CAZy includes only endoglucanases, marine sources has focused on enzymatic hydrolysis of
except two exo1→3βDglucosidases. These two exo polysaccharides. Glycosidic bonds under the influence of
enzymes are found in the Ascomycota fungi, their primary Oglycoside hydrolases are mainly hydrolyzed by the
structure is established, and their posttranslational mod acidbase catalysis. This mechanism needs two amino
ifications and active sites are also studied. However, the acid residues: one of them donates protons and the other
authors did not study biochemical properties of these accepts them, and the process is accompanied either by
enzymes, and in one case they assigned the enzyme to EC inversion, or by retention of the bond configuration at the
3.2.1.58 based on the likeness of the amino acid sequence anomeric carbon atom. Enzymes retaining the configura
with another enzyme [70]. In the other case, it has been tion are shown to catalyze not only hydrolysis of glycoside
mentioned that the enzyme can successfully hydrolyze bonds, but also glycosyl residue transfer from the sub
both 1→3βDglucans and mixed 1→3;1→4 and 1→6 strate (donor) onto another acceptor – a molecule that
Hydrolysis
Fig. 4. Scheme of hydrolysis and transglycosylation reactions catalyzed by “retaining” Oglycoside hydrolases.
401.063
280.966
100
340.987
266.986
80
Relative intensity, %
184.983
60
40
221.008
148.984
135.004
20
0
140 160 180 200 220 240 260 280 300 320 340 360 380 400 m/z
Fig. 5. Mass spectrum CID ESIMS/MS obtained in the positive ion mode, and the structure of products of transglycosylation reaction cat
alyzed by endo1→3βDglucanase from L. sitkana. The donor is laminaran, the acceptor is 6OmethylβDglucuronic acid. The square
marks a peak of the [GlcGlcAH+2Na]+ ion, m/z 401.063 [55].
a b
100
– hydrolysis products
– transglycosylation products
75
Relative intensity, %
50
25
0
0 200 400 600 800 1000 0 200 400 600 800 1000
m/z
Fig. 6. ESI MS spectrum of products of hydrolysis and transglycosylation reactions catalyzed by endo1→3βglucanases from L. sitkana (a)
and P. sachalinensis (b). Laminaran was used as a donor and glycerol as an acceptor [55].
searches were performed among many enzymatic prepa of new enzymes with different specificity and capability of
rations, mainly among commercial ones, and the region producing glycoside bonds. Studies on the transglycosy
associated selectivity of transglycosylation reactions was lating activity of Oglycoside hydrolases allow us to get
analyzed. These searches resulted in creation of a library information about the action mechanism of these
of glycosidases [84]. The accumulated experience has enzymes and on the structure of their active center. Using
shown that marine organisms are very promising sources these enzymes for preparing conjugates with different
P. viridis 33.0 n.d. 4.56.0 45 n.d. β1→3 0.3 70 n.d. β1→3 n.d. 0
T. literata 37.0 6.3 4.57.0 40 01.5 β1→3 0.25 68 n.d. β1→3 n.d. 0
L. sitkana 39.3 n.d. 5.4 40 n.d. β1→3 0.13 n.d. β1→3 n.d. 0
β1→4