net reaction describes the starting materials and the products of a reaction
R
+RT ln
[RCOOR][H
2
O]
[RCOOH][ROH]
G
R
>0
G
R
<0
G
R
=0
exergonic reaction, runs from left to right
endergonic reaction, runs from right to left
reaction is in equilibrium
Organic Reaction Mechanisms
equilibrium constant K
R
is the ratio of reactant concentrations in equilibrium
R
+RT ln
[RCOOR]
eq
[H
2
O]
eq
[RCOOH]
eq
[ROH]
eq
=0
K
R
=
[RCOOR]
eq
[H
2
O]
eq
[RCOOH]
eq
[ROH]
eq
pK
R
=logK
R
G
R
=RT lnK
R
pK
R
G
R
RT
Organic Reaction Mechanisms
R
=H
R
TS
R
Gibbs-Helmholtz Equation
exothermic reactions, sum of all bond energy changes negative
endothermic reactions, sum of all bond energy changes positive
exotropic reactions, disorder, degrees of freedom decrease
endotropic reactions, disorder, degrees of freedom increase S
R
>0
S
R
<0
H
R
>0
H
R
<0
Organic Reaction Mechanisms
reaction rates r are proportional to the product of the concentrations of all reactants
reaction order is the sum of all exponents of the concentrations of all reactants in the rate law
for simple, single-step reactions, the molecularity determines the reaction order
reaction kinetics refers to how fast reactions proceed, i.e., the reaction rates
rate laws describe the relation between substrate concentrations and reaction rates
Kinetics of Chemical Reactions
95
A B
A + B C + D
A + B + C D
r
1r
=k
1r
[B] r
1f
=k
1f
[A]
r
2r
=k
2r
[C][D] r
2f
=k
2f
[A][B]
r
3f
=k
3f
[A][B][C]
r
4f
=k
4f
[A]
2
[C]
r
3r
=k
3r
[D]
frst order monomolecular monomolecular frst order
second order bimolecular bimolecular second order
third order trimolecular monomolecular frst order
third order trimolecular bimolecular second order
r
4r
=k
4r
[C]
2
2 A + B 2 C
Organic Reaction Mechanisms
the ratio of rate constants of forward and reverse reactions determines equilbrium constant K
the faster the forward (relative to reverse) reaction, the more the equilibrium is on product side
starting materials (S) and products (P) are stable compounds, i.e., energetic minima
transition states () are saddle points in the energy hypersurface, maxima in the reaction prole
reaction proles are simplied energy diagrams of chemical reactions, following the lowest
energy path from the starting materials to the products in the energy hypersurface
Reaction Proles (1)
97
P
S
E
d
HBr
d
HH
Br + H H H + Br H
S
E
Rkt
P
Organic Reaction Mechanisms
starting materials (S) and products (P) are stable compounds, i.e., energetic minima
transition states () are saddle points in the energy hypersurface, maxima in the reaction prole
reaction proles are simplied energy diagrams of chemical reactions, following the lowest
energy path from the starting materials to the products in the energy hypersurface
Reaction Proles (2)
98
P
S
E
d
HBr
d
HH
Br + H H H + Br H
S
E
Rkt
P
Organic Reaction Mechanisms
S
E
Rkt
P
G
f
= G
r
< 0
G
f
< G
r
S
E
Rkt
P
G
f
= G
r
> 0
G
f
> G
r
K
R
=
k
f
k
r
exergonic reaction endergonic reaction
E
A,r
G
r
=RT lnk
r
E
A, f
G
f
=RT lnk
f
fast
slow
slow
fast
G
R
=G
f
G
r
r
f
=r
r
k
f
[S]
eq
= k
r
[P]
eq
k
f
k
r
=
[P]
eq
[S]
eq
=K
R
Organic Reaction Mechanisms
Hammond Postulate: Energetically more similar states are also geometrically more similar
Polanyi Principle and Hammond Postulate for mechanistically similar, single-step reactions
Hammond Postulate and Polanyi Principle
100
3
S
E
Rkt
P
1
P
2
P
3
G
3f
> G
2f
= 0 > G
3f
G
3f
> G
2f
= G
2r
> G
3f
exergonic
endergonic
late transition state
higher activation energy
early transition state
lower activation energy
Organic Reaction Mechanisms
overall reaction rate and molecularity are controlled by slowest, rate-determining step
intermediate is a good approximation for the transition state of the rate-determining step
elementary reactions are steps between the minima in the reaction prole, i.e., between
starting materials (S), intermediates (I), and products (P), seprated by transition states ().
Multistep Reactions
101
1
I
E
Rkt
S
2
P
G
f
= G
r
< 0
G
2f
< G
2r
elementary step 1 elementary step 2
slow fast
G
1f
> G
1r
Organic Reaction Mechanisms
R
=RT lnK
R
Rkt
S
E
P
G
f
= G
r
< 0
leads to change in reaction rates
G
f
G
r
S
E
Rkt
P
G
f
= G
r
< 0
G
f
G
r
f
=RT lnk
f
G
r
=RT lnk
r
and
Organic Reaction Mechanisms
Reaction Proles: Thermodynamics and Kinetics
104
higher energy transition state very high energy transition state
forward/reverse reactions slower
S
E
Rkt
P
G
f
= G
r
< 0
G
f
G
r
equilibrium cannot be established
metastable
S
E
Rkt
P
G
f
= G
r
< 0
G
f
G
r
change in temperature also causes reaction rates because of thermal energy of molecules
Reaction Proles: Thermodynamics and Kinetics
105
lower temperature higher temperature
forward/reverse reactions slower forward/reverse reactions faster
S
E
Rkt
P
G
f
= G
r
< 0
G
f
G
r
Rkt
S
E
P
G
f
= G
r
< 0
classication according to reaction type, i.e., the type of changes to molecular topology
Classication of Organic Reactions (1)
107
R
1
X
R
2
R
3
+ Y
R
1
Y
R
2
R
3
+
X
Substitution
Substitution
R
3
R
1
R
2
R
4
Y
X
R
2
R
3
R
4
R
1
+ X + Y
Addition
Elimination
R
3
R
1
R
2
R
4
+ Y
Y
R
2
R
3
R
4
R
1
Addition
Elimination
R
1
X
Y
R
3
R
2
X
Y
R
3
R
2
R
1
Rearrangement
Rearrangement
Organic Reaction Mechanisms
R
R
R
X
X
R
R
R
Y
Y
R
1
C
R
2
R
3
C R
1
R
2
R
3
carbanion
sp
3
pyramidal
carbocation
sp
2
planar
carbon radical
sp
2
or sp
2
or in between
planar or pyramidal
bond heterolysis bond homolysis
polar mechanisms
nucleophiles or electrophiles
radical mechanisms
radical starters
Organic Reaction Mechanisms
3.3
Nucleophilic Substitutions (S
N
Reactions)
good leaving group, stabilized carbocation will decrease energy of the intermediate (favorable)
S
N
1 Mechanism: Rate-Determining Step is Unimolecular
111
R
1
C LG
R
2
R
3
R
1
C Nu
R
2
R
3
+
R
1
R
2
R
3
sp
3
sp
3
sp
2
LG
Nu
+
R
1
C Nu
R
2
R
3
sp
3
or
1
I
E
Rkt
S
2
P
G
f
= G
r
< 0
G
2f
< G
2r
slow fast
G
1f
> G
1r
racemic mixture pure enantiomer planar, achiral
Organic Reaction Mechanisms
Examples of S
N
1 Reactions
112
Cl
+ MeOH
Cl
+ MeOH
O
Me
H
H
OMe
trityl chloride methanol
good leaving group
excellently stabilized cation
moderate nucleophile
OTf
+
O
O
CH
3
NaOAc
TfO
CH
2
Br Br
+
Na
OAc
Br
Na
benzylbromotrifate sodium acetate
excellent leaving group
well-stabilized cation
moderate nucleophile
Organic Reaction Mechanisms
pK
A
values are a measure of the strength of a Brnsted acid
the lower the pKA value, the more is the equilibrium on the side of the dissociated ions
pK
A
values of the corresponding acids are a measure for leaving group quality (lower is better)
S
N
1 reactions are cation-anion dissociation reactions like acid-base reactions
Analogy of S
N
1 Reactions and Acid-Base Reactions
113
pK
A
=logK
A
=log
[H
+
][LG
]
HLG
Organic Reaction Mechanisms
R
LG
R
+
LG
R
H LG +
LG H
S
N
1 reaction
acid-base reaction
Brsted acid
Brsted acid leaving group
conjugate base
leaving group quality is approximately inverse to the basicity of the obtained anion
scale by pK
A
values of the corresponding acids
Leaving Group Quality
114
O H
5
O
Me >
O H
1
O
CF
3
>
O H
10
S
O
Me >
15
O
O H
S
O
CF
3
O
>
O H
7
S
O O
F H Cl H Br H I H
> > >
10 9 7 3
F H OH H NH
2
H CH
3
H
> > >
3 16 38 48
Organic Reaction Mechanisms
Trivial Names and Abbreviations of Important Leaving Groups
115
O R
O
Me >
O R
O
CF
3
>
O R
S
O
Me >
O
O R
S
O
CF
3
O
>
O R
S
O O
OAc R OTFA R OMs R OTf R OTs R
trifuoromethanesulfonate
trifate
methanesulfonate
mesylate
4-toluenesulfonate
tosylate
trifuoroacetate acetate
Organic Reaction Mechanisms
S
N
1 reactions very favorable in benzyl or allyl position (in particular with donor atoms)
S
N
1 reactions also observed on highly substituted sp
3
carbons
S
N
1 reactions never observed in phenyl position (or other sp
2
or sp hybridized carbons)
the more delocalization (donor groups, larger aromatic systems), the better stabilization
the more alkyl groups (the higher substituted), the better stabilized is carbocation
!
+
<
<
<
!
+
R
R
<
C C
H
H
H
R
R
C C
H
H
H
R
R
C C
H
H
H
R
R
C C
H
H
H
R
R
EN 1.9 EN 1.9 EN 2.5
E
Nu LG
R
1
C
R
2
R
3
LG Nu
R
1
C
R
2
R
3
LG Nu
R
1
C
R
2
R
3
Nu LG
R
1
C
R
2
R
3
E
(S)
(P)
pure enantiomer pure enantiomer
stereoinversion
R
1
C LG
R
2
R
3
sp
3
R
1
R
2
R
3
Nu LG
LG
R
1
C Nu
R
2
R
3
sp
3
Nu
Organic Reaction Mechanisms
amides (NR
2
), acids (OH), and carboxylates have very poor leaving groups
acid halides, anhydrides (and some esters) have good (or at least moderate) leaving groups
reminder: leaving group quality strictly controlled by basicity of the leaving group anion!
addition of the nucleophile prior to cleavage of the leaving group is possible, advantageous!
sp
2
C
O
LG
R
Nu +
1
I
E
Rkt
S
2
P
G
f
= G
r
< 0
G
2f
< G
2r
slow fast
G
1f
> G
1r
Organic Reaction Mechanisms
Active Acid Derivatives
124
Cl
O
O
O
H
3
C
O
CH
3
S
O
S
O
F
3
C
O
CF
3
O O
Cl
S
O O
H
3
C
acid chlorides
acid anhydrides
perfuorophenyl esters
N-succinyl esters
Cl
O
R
O
O
R
F
F
F
F
F
N
O
O
R
O
O
O
O
R
O
R R
O
O R O
O
Cl
O
F
F
F
F
F
C
O
F
F
F
F
F
N
O
O
O
N
O
O
O
etc.
etc.
pK
A
(HCl) = 7
pK
A
(RCOOH) 4
pK
A
(PfpOH) 6
pK
A
(SuOH) 10
benzoyl chloride
(BzCl)
tosyl chloride
(TsCl)
acetic anhydride
(AcOAc, Ac
2
O)
mesyl chloride
(MsCl)
Trific anhydride
(TfOTf, Tf
2
O)
Cl
S
O
H
3
C
O
active ester
active ester
Cl
O
H
3
C
acetyl chloride
(AcCl)
Organic Reaction Mechanisms
Examples for Nucleophilic Substitutions on Carbonyl Carbons
125
OH
Cl
S
O O
CH
3
NEt
3
HNEt
3
Cl
O
TsCl
S
O
O
CH
3
OTs
NH
2
NEt
3
HNEt
3
AcO
HN
Ac
2
O
NHAc
O
O
H
3
C
O
CH
3
CH
3
O OH HO OH
tosylation
acetylation
Organic Reaction Mechanisms
H
2
N R'
N
H
O
R
R' +
N
H
C
N
H
O
peptide
Organic Reaction Mechanisms
3.4
Electrophilic Additions to Olefns (A
E
Reactions)
Reactions of Olens with Electrophiles
128
R R
El
El
H
H
H
H
H
H
Nu +
R
El
H
H
H
Nu
R
R COOH Cl
> > >
R
Ph R
R
R
R
R
R
OR
> > > >
olens are (weak) nucleophiles and react with electrophiles to form carbocations
reactivity order
decreasing electron density (M or I efect)
Organic Reaction Mechanisms
Examples
129
hydrohalogenation of olens
hydration of olens
H
OH
H HSO
4
H
2
O
H
Br
H Br
Br
Br
Br Br
1
I
E
Rkt
S
2
P
G
f
= G
r
< 0
G
2f
< G
2r
slow fast
G
1f
> G
1r
(HOMO)
* (LUMO)
backside attack
1
I
E
Rkt
S
2
P
G
f
< G
r
G
2f
< G
2r
slow
fast
G
1
> G
1
1
I
P
2
G
2f
< G
2r
slower fast
H
H
H
H
H
H
Ph
Br
Br
H
Ph
H
H
H
Ph
H
H Br
H
H
Ph
H
H
Br
Br
H
H
H
Ph
H
IMarkovnikov rule: in HX addition, X is added to the higher substituted carbon (the more you
have, the more you get)
Organic Reaction Mechanisms
Stereoselectivity of Electrophilic Additions
132
Me
H
H
Ph
Br
Me
H
H
Ph
Br
+
Br Br
(R) (R)
(S) (S)
Me
H
Br
Br
Ph
H
C
H
Me
C
H
Ph
Br
(S) (S)
(R) (R)
H
Me
Br
Br
H
Ph
+
Me
Ph
H
H
Br
Me
Ph
H
H
Br
+
Br Br
(R) (R)
(R) (R)
Me
H
Br
Br
H
Ph
C
H
Me
C
Ph
H
Br
(S) (S)
(S) (S)
H
Me
Br
Br
Ph
H
+
(E)
(Z)
electrophilic additions are diastereospecic, i.e., an olen with a given conguration (E or Z) will
specically be transformed into one diastereomer of possible adducts (a pair of enantiomers)
bromination
!
+
R
Cl AlCl
3
!
!
+
R
O
+ AlCl
3
+ AlCl
3
+ AlCl
4
H Br
Br Br
+ FeCl
3
Br Br FeCl
3
!
!
+
+ FeBrCl
3
H SO
3
H
H
2
SO
4
H
2
O
H NO
2
HNO
3
/ H
2
SO
4
H
2
O
NO
2
H
3
O 2 HSO
4
HSO
3
HSO
4
Organic Reaction Mechanisms
Mechanism of Electrophilic Aromatic Substitutions
136
complex
addition product
substitution product
in electrophilic aromatic substituions, the most acidic hydrogen is replaced with an electrophile
1
E
Rkt
2
P
P
G
f
= G
r
< 0
G
2f
< G
2r
slow fast
G
1f
> G
1r
El
H
H
El H
El
H
H
H
El
complex
Organic Reaction Mechanisms
Regioselectivity in Electrophilic Aromatic Substitutions
137
most common are eliminations of hydrogen (H) and leaving group (LG) on adjacent carbons
E1 mechanism: leaving group leaves frst, hydrogen leaves subsequently
E1
cb
mechanism: base frst removes hydrogen and generates conjugate base, then leaving group leaves
E2 mechanism: concerted reaction
C
R
4
R
3
C
R
1
R
2
C
R
3
H
C
H
R
1
R
2
H
H
C C
R
1
H
R
2
H
R
3
LG
+ Base
H Base
C C
R
1
R
2
H
R
3
LG
C C
R
1
H R
2
H
R
3
LG
Base
!
!
+
!
+
!
" #
LG
E1: absence of a nucleophile, non-nucleophilic base (if any), many or acidic -hydrogens
S
N
1: presence of a (good, not too basic) nucleophile, few or non-acidic -hydrogens
LG
C
R
3
H
C
H
R
1
R
2
H
C C
R
1
H
R
2
H
R
3
LG
H
Nu
+
C
R
4
R
3
C
R
1
R
2
C C
R
2
H
R
1
H
R
3
Nu
C C
R
1
H
R
2
H
R
3
Nu
+
(base)
E1 Elimination
S
N
1 Substitution
Organic Reaction Mechanisms
Competition of S
N
2 and E1
cb
/E2 Reactions
142
Organic Reaction Mechanisms
E1
cb
/E2: moderate/poor leaving group, strong non-nucleophilic base, acidic -hydrogens
S
N
2: good, non-basic nucleophile (e.g., I
, RS
, PR
3
, H
2
O), few or non-acidic -hydrogens
E1
cb
Elimination
S
N
2 Substitution
C C
R
1
H
R
2
H
R
3
LG
+ Base
H Base
C C
R
1
R
2
H
R
3
LG
C
R
4
R
3
C
R
1
R
2
Nu
+
C C
R
1
H
R
2
H
R
3
LG
Nu
C C
R
2
H
R
1
H
R
3
Nu
LG
Non-Nucleophilic Bases
143
Organic Reaction Mechanisms