J. Phycol.
38,
11901199 (2002)
TWO DIFFERENT SPECIES OF
EUGLENA
,
E. GENICULATA
AND
E. MYXOCYLINDRACEA
(EUGLENOPHYCEAE), ARE VIRTUALLY GENETICALLY AND
MORPHOLOGICALLY IDENTICAL
1
Bo ena Zakry ,
2
Rafal Milanowski
Department of Plant Systematics and Geography, Warsaw University, Al. Ujazdowskie 4, PL-00-478 Warszawa, Poland
Joanna Empel, Piotr Borsuk
Department of Genetics, Warsaw University, Pawi skiego 5A, PL-02-106 Warszawa, Poland
Robert Gromadka
Institute of Biochemistry and Biophysics, Polish Academy of Science, Pawi skiego 5A, PL-02-106 Warszawa, Poland
and
Jan Kwiatowski
Department of Plant Systematics and Geography, Warsaw University, Al. Ujazdowskie 4, PL-00-478 Warszawa, Poland
z
.
s
n
n
We investigated the similarity of a single
Euglena
myxocylindracea
strain, isolated originally by Bold and
MacEntee, to several
Euglena geniculata
strains on both
morphological and DNA levels. We found the three
DNA stretches, consisting of fragments coding for the
parts of cytoplasmic and chloroplast small subunit
rRNA, and the internal transcribed spacer (ITS2) of
cytoplasmic rDNA, with the combined length of 4332
nucleotides, are identical in
E. myxocylindracea
and
E. geniculata
, strain SAG 1224-4b. Morphological dif-
ferences between
E. myxocylindracea
and any
E. genic-
ulata
strain examined were well within the range of
E. geniculata
variability as well. The only difference be-
hind the distinction of
E. myxocylindracea
from
E. gen-
iculata
is the presence of the second chloroplast in the
latter. However, we were able to induce the appear-
ance of the second chloroplast in the cells of
E. myxo-
cylindracea
and its disappearance in the cells of
E. genic-
ulata
by changing the composition of the culture
media. We therefore conclude that
E. myxocylindra-
cea
Bold and MacEntee should be regarded as an en-
vironmental form of
E. geniculata
Dujardin. For the
first time the morphology of
E. geniculata
chloro-
plasts was shown as revealed by confocal laser mi-
croscopy.
Key index words:
16S rDNA; 18S rDNA; chloroplasts;
Euglena geniculata
;
Euglena myxocylindracea
; ITS2; mo-
lecular phylogeny; taxonomy
Abbreviations:
ITS, internal transcribed spacer; SSU,
small subunit
After more than 150 years of floristic and system-
atic studies on euglenoid species, several systems of
classification and over 1000 described taxa (species,
varieties, and forms) have emerged. Recently, molecu-
lar data were introduced into the taxonomical debate,
proving obsolete some classification systems based on
morphological characters. The problem seems to be
particularly acute in the case of euglenoid species,
which are single celled and morphologically relatively
simple organisms. In particular, many species of
Phacus,
Lepocinclis
, and
Euglena
are more closely related to
species from other genera rather than to those of the
same genus (Leander and Farmer 2000, 2001, Linton
et al. 2000, Milanowski et al. 2001, Mllner et al.
2001).
In this work we report on apparent genetic identity
of two euglenoid species differentiated by a morpho-
logical criterion, namely the number of chloroplasts.
Euglena myxocylindracea
Bold and MacEntee (1973),
with its one chloroplast, is distinguished from
E.
geniculata
Dujardin (1841), which has two, based on a
prevailing practice in
Euglena
systematics that attributes
great weight to chloroplast number and morphology
(Gojdics 1953, Huber-Pestalozzi 1955, Pringsheim 1956,
Popova 1966, Popova and Safonova 1976, Zakry 1986,
Zakry and Walne 1994, Kim et al. 1998, Shi et al.
1999).
Chloroplast number has been considered a primary
criterion of classification, particularly in the subgenus
Euglena
(sensu Zakry 1986), where axially located
star-shaped chloroplasts are only few, numbering one
to three, whereas other features, such as the size and
shape of the cell and the presence, size, and shape of
the mucocyst (bodies located close to periplast), were
considered secondary. Based on these criteria, three
groups were distinguished in the subgenus
Euglena
: 1)
those with a single chloroplast located in front of the
nucleus (
E. archaeoviridis
Zakry and Walne,
E. cant-
abrica
Pringsheim,
E. cuneata
Pringsheim,
E. myxocylin-
dracea
Bold and MacEntee,
E. stellata
Mainx, and
E. viri-
dis
Ehrenberg), the so-called viridis group; 2) those
s
s
s
s
1
Received 20 February 2002. Accepted 23 July 2002.
2
Author for correspondence: e-mail zakrys@mercury.ci.uw.edu.pl.
1191
TWO
EUGLENA
SPECIES ARE IDENTICAL
with two chloroplasts on two opposite sides of the nu-
cleus (
E. chadefaudii
Bourrelly,
E. dicentra
Skuja,
E. gen-
iculata
Dujardin, and
E. schmitzii
(Schmitz) Gojdics),
termed the geniculata group; and 3) those with three
chloroplasts (
E. tristella
Chu).
This system of classification allowed easy distinction
between the three groups mentioned above, whereas
identification of particular species was difficult within
the first two groups, because those species were dis-
criminated on the basis of the secondary features (size
and shape of the cell, as well as the mucocyst mor-
phology and arrangement). By the above primary cri-
terion,
E. myxocylindracea
(having only one chloroplast)
is closely affiliated with the other species possessing
one chloroplast. On the other hand, the only trait dis-
tinguishing
E. myxocylindracea
from
E. geniculata
is the
number of chloroplasts. However, three different
DNA stretches in
E. myxocylindracea
analyzed in this
study proved to be identical to their homologues from
one of the
E. geniculata
strains (having two chloro-
plasts). Following this finding, we asked whether the
number of chloroplastsa strict taxonomic criterion
in
Euglena
could be environmentally dependent and
whether the second chloroplast could be induced in
an
E. myxocylindracea
strain and eliminated in an
E.
geniculata
strain by changing their growth conditions.
materials and methods
Euglenoid strains and culture conditions.
The strains used in this
study are shown in Table 1. All strains were cultivated in liquid
soilwater medium, enriched with a small piece of a garden pea
(medium 3c, Schlsser 1994) under identical conditions in a
growth chamber maintained at 17
C and 16:8-h light:dark,
with approximately 27
mol photons
1
provided by cool-
white fluorescent tubes. Additionally, in experiments aimed at
inducing changes in a cell chloroplast number,
E. geniculata
strain 4b, 4f, and
E. myxocylindracea
were cultivated in media,
composed of mineral medium I and organic medium II, mixed
in different proportions. Four variants, A, B, C, and D, contain-
ing, respectively, 95, 90, 75, and 50% of medium I were used.
Medium I (pH 4.6) consisted of 600 mg
1
KH
2
PO
4
, 160
mg
1
Ca(NO
3
)
2
4H
2
O, 800 mg
1
MgSO
2
7H
2
O, 2 g
1
(NH
4
)
2
SO
4
, 12 mg
1
FeCl
3
, 4 mg
1
ZnSO
4
7H
2
O, 1.4
mg
1
MnSO
4
5H
2
O, 0.4 mg
1
CuSO
4
H
2
O, 0.6 mg
1
H
5
BO
3
, 0.6 mg
1
vitamin B
1
, 0.004 mg
1
vitamin B
12
, 50
mLL
1
soil extract, and 20 mLL
1
sphagnum extract. Medium
II consisted of 1 gL
NaC
2
H
3
O
2
, 2 gL
1
trypton, 2 gL
1
yeast
extract, and 0.1 gL
1
CaCl
2
. Cultures of E. myxocylindracea and
E. geniculata from medium 3c were transferred to four variants
of liquid media and kept in test tubes in a light chamber for 3
days. Then, every 2 days for the next 14 days the cultures were
sampled for microscopic analysis.
Biometric studies. Biometric measurements were performed
using the LUCIA Measurement program (Laboratory Imaging
s.r.o., Praha, Czech Republic). One hundred randomly chosen
actively swimming cells from each of the eight strains of E. genicu-
lata and one strain of E. myxocylindracea were analyzed. For each
strain, four cellular parameters were measured: length, width,
Table 1. Strains and accession numbers for cytoplasmic and chloroplast SSU rDNA sequences. Those obtained in this study are
in boldface.
Taxon Strain
GenBank accession no.
16S rDNA 18S rDNA ITS
Colacium vesiculosum UW azienki AF289238
Colacium vesiculosum UTEX LB1315 AF081592
Euglena agilis UTEX 1605 AF115279
Euglena agilis UW Pruszkow-1 AF289239
Euglena gracilis unknown M12677
Euglena gracilis unknown X12890
Euglena geniculata SAG 1224-4b AF289241 AY070249 AY070243
Euglena geniculata SAG 1224-4c AY070244
Euglena geniculata SAG 1224-4f AY070252 AY070248 AY070237
Euglena geniculata SAG 1224-4g AY070238
Euglena geniculata ACOI 66 AY070241
Euglena geniculata ACOI 197 AY070239
Euglena geniculata ACOI 530 AY070240
Euglena geniculata ACOI 994 AY070242
Euglena myxocylindracea UTEX 1989 AY070251 AY070250 AY070245
Euglena spirogyra SAG 1224-13b AF289243
Euglena spirogyra UTEX 1307 AF150935
Euglena stellata SAG 1224-14 AF289244
Euglena stellata UTEX 372 AF150936
Euglena tripteris UW OB AF289245
Euglena tripteris unknown AF286210
Euglena tristella SAG 1224-35 AF289246 AY070247
Euglena viridis SAG 1224-17d AF289248 AY070246
Lepocinclis fusiformis ACOI 1025 AF289249
Lepocinclis ovum SAG 1244-8 AF110419
Phacus pleuronectes SAG 1261-3b AF289251
Phacus pleuronectes unknown AF081591
Eutreptia viridis SAG 1226-1c AF289247 AF157312
ACOI, Culture Collection of Algae at the Department of Botany, University of Coimbra, Portugal; SAG, Sammlung von
Algenkulturen Pflanzenphysiologisches Institut der Universitt Gttingen, Germany; UTEX, Culture Collection of Algae at the
University of Texas at Austin, Texas, USA; UW, Department of Plant Systematics and Geography of Warsaw University, Poland.
1192 BO ENA ZAKRY ET AL. Z
.
S
circularity, and the area of the projection of the cell on a flat sur-
face. Because these features were not independent, one-dimen-
sional variance analyses were performed for each of them. After
rejecting the null hypothesis that there is no difference between
subpopulations, the differences between subpopulations were es-
timated by the Tukey honest significant difference test.
Confocal microscopy. All observations were done on material
preserved with a 10% solution of glutaraldehyde by adding one
drop of a fixative and one drop of water to the fresh material
placed on the slide. The cells were then viewed on a Zeiss LSM
510 (Zeiss, Jena, Germany) confocal laser scanning microscope
at an excitation wavelength of 543 nm.
DNA Isolation, amplification, and sequencing. Isolation of DNA
(using Dneasy Tissue Kit-QIAgen, QIAgen GmbH, Hilden, Ger-
many), amplification, purification of PCR products, and se-
quencing of chloroplast small subunit (SSU) rDNA was per-
formed as previously described (Milanowski et al. 2001). Primers
for PCR amplification and sequencing are shown in Table 2.
For 18S rDNA amplification, a 50-mL reaction mixture was
used, containing 1 U of Taq polymerase (MBI Fermentas, Vilnius,
Lithuania), 0.2 mM dNTPs, 2.5 mM MgCl
2
, 10 pmol of each
primer, reaction buffer (MBI Fermentas), and 1050 ng DNA.
The PCR protocol consisted of 5 min of denaturation at 95 C,
followed by five initial cycles comprising 0.5 min at 95 C, 0.5
min at 56 C, and 1.5 min at 72 C, then by 30 cycles comprising
0.5 min at 95 C, 20 s at 58 C, and 1.5 min at 72 C. The final
extension step was performed for 7 min at 72 C. PCR products
were sized on agarose gels and purified using QIAEXII gel ex-
traction kit (QIAgen). Purified PCR products were sequenced
with external and internal primers (slightly modified from El-
wood et al. 1985) by cycle sequencing using BigDye Terminator
Cycle Sequencing Ready Reaction Kit (Applied Biosystems, Fos-
ter City, CA, USA). The internal transcribed spacer (ITS2) DNA
was amplified in a 50-mL mixture containing 1 U of Taq poly-
merase (MBI Fermentas), 0.2 mM dNTPs, 10 mM MgCl
2
, 5
pmol of each primer, reaction buffer (MBI Fermentas), and
1050 ng of DNA. The PCR protocol consisted of 5 min of de-
naturation at 95 C, followed by 7 initial cycles comprising 0.5
min at 95 C, 2 min at 50 C, and 1.5 min at 72 C, then by 35 cy-
cles comprising 0.5 min at 95 C, 0.5 min at 5760 C and 1.5
min at 72 C. The final extension step was performed for 10
min at 72 C. PCR products were purified either by precipita-
tion with 98% ethanol and 0.3 M potassium acetate or by elec-
trophoresis and excision of a predominant band, followed by
purification with QIAEXII gel extraction kit (QIAgen). PCR
products were sequenced from both strands with ITS2 forward
and reverse primers by cycle sequencing using BigDye Termi-
nator Cycle Sequencing Ready Reaction Kit (Applied Biosys-
tems). All readings (16S rDNA, 18S rDNA, ITS2) from ABI Prism
310 or 377 DNA sequenator (Applied Biosystems, Foster City, CA,
USA), after removal of primer sequences, were assembled into
contigs by the SeqMan program of the LASERGENE package
(DnaStar, Madison, WI, USA) and checked manually for consistency.
Sequence accession numbers, alignment, and phylogenetic analysis.
The GenBank accession numbers for SSU rDNA sequences re-
ported here and the sequences used for phylogenetic analyses
are shown in Table 1. Alignment of sequences was obtained us-
ing the Clustal W 1.8 program (Thompson et al. 1994) with de-
fault options and was manually checked and edited according
to the secondary structure of Euglena gracilis as suggested by
Van de Peer et al. (1999). Several regions that could not be un-
ambiguously aligned were omitted from analyses. All nucle-
otides were treated as independent and unordered multistate
characters of equal weight. The alignments used for analyses are
available online at http://www.blackwellpublishing.com/products/
journals/suppmat/JPY/JPY02020/JPY02020sm.htm. The Hasegawa-
Kishino-Yano model (Hasegawa et al. 1985), with parameter val-
ues estimated by maximum likelihood, was used for distances
calculations. Distance analyses, as well as maximum likelihood pa-
rameter estimation, were performed by PAUP, version 4.0b6 for
Microsoft Windows (Swofford 1998). The heuristic search op-
tion, with MULPARS, tree-bisection-reconnection branch swap-
ping, ACCTRAN optimization, and random addition with 100
replicates, was used to find the best tree. Bootstrap support of spe-
cific nodes (Felsenstein 1985) was estimated with 1000 replica-
tions and default options, as implemented in PAUP. The se-
quence of Eutreptia viridis, member of Eutreptiaceae, was used to
root the trees. Trees were drawn by Tree View, Version 1.6.1 for
Microsoft Windows (Page 1996).
results
Sequence analysis. We obtained almost complete se-
quences of chloroplast and cytoplasmic SSU rDNA
from several species of Euglena subgenus Euglena, in-
cluding E. myxocylindracea and two E. geniculata strains,
4b and 4f. The E. myxocylindracea rDNAs appeared to be
identical to the ones from E. geniculata, strain 4b, raising
the possibility that the two species are actually two some-
what different morphological forms of the same species.
Figures 1 and 2 show the minimum evolution trees
with maximum likelihood distances obtained for SSU
rDNA from chloroplast and cytoplasmic ribosomes,
respectively, with the substitution model of Hasegawa-
Kishino-Yano (1985). The tree shown in Figure 1 was
obtained with values estimated for the following pa-
rameters: base frequencies (A 0.2899, C 0.1837,
G 0.2354, T 0.2910), proportion of invariable
sites (0.2341), gamma shape parameter (0.4442), and
transition/transversion ratio 2.6182. The values es-
timated for the tree from Figure 2 were as follws: base
frequencies (A 0.2325, C 0.2614, G 0.2482, T
0.2578), proportion of invariable sites (0.2637), gamma
shape parameter (0.5269), and transition/transver-
sion ratio 1.8169. The trees are similar with respect
to the branching order relevant for this study. They
both reveal several known facts about Euglenoid phy-
logeny observed earlier (Leander and Farmer 2000,
2001, Linton et al. 2000, Milanowski et al. 2001, Mll-
ner et al. 2001). First, some relationships are poorly
resolved. Second, several genera, including Phacus,
Lepocinclis, and Colacium, are intermixed with Euglena
species. Thus, the genus Euglena, represented here by
more than one species, is not monophyletic. Third, a
Table 2. Nuclear rDNA primers used for PCR amplification
and sequencing.
Primer Position of 3 end Sequence (5-3)
18S5 89 CAGTGGGTCTGTGAATGGCTCC
18S382F 483 AGGGTTCGATTCCGGAG
18S557R 668 TTACCGCAGCTGCTGGC
18S570F 682 GTGCCAGCAGCTGCGGT
18S892R 1293 CTAAGAATTTCACCTCTG
18S1125R 1539 CAATTCCTTTAAGTTTC
18S1141F 1555 CAAACTTAAAGGAATTG
18S1263R 1677 GAGCGGCCATGCACCAC
18S3 2127 CGACGGGCGGTGTGTACAAGT
ITS2F 48 (5.8S rDNA) GCATCGATGAAGAACGCAGC
ITS2R 38 (28S rDNA) TTCCTCCACTGAGTGATATGC
18S rDNA primers for PCR are from the sequence of E.
gracilis (Sogin et al. 1996). ITS2 forward primer corresponds to
the first component of large subunit rRNA5.8S rRNA (E.
Linton, unpublished data). ITS2 reverse primer corresponds to
the second component of LSU rRNAthe first of the 13 small
RNAs that form an equivalent of 2528S rRNA in E. gracilis
(Schnare and Gray 1990, Schnare et al. 1990).
1193 TWO EUGLENA SPECIES ARE IDENTICAL
clade (100% bootstrap in Fig. 1 and 69% in Fig. 2)
consisting of Euglena subgenus sensu Zakry (1986) is
present on the trees. Within this group there is a very
well defined clade (bootstrap support of 100% on both
trees) consisting of two E. geniculata strains and E. myxo-
cylindracea. As expected, E. myxocylindracea and E. genic-
s
ulata 4b, which have identical rDNA sequences for both
compartments, form clades with a 100% bootstrap sup-
port on both trees.
To further assess the genetic similarity of the two
species, we sequenced the fragment encompassing the
part of 5.8 S rRNA and ITS2 from the original strain
FIG. 1. The minimum evolution tree of selected euglenoid SSU rDNA sequences from chloroplast ribosomes based on maximum
likelihood distances. Bootstrap values higher than 50% (1000 replications) are shown at the nodes. See text for parameter values of
the Hasegawa-Kishino-Yano (1985) model of sequence evolution.
1194 BO ENA ZAKRY ET AL. Z
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S