Saurav K Sarkar
Discipline : B. Tech (Biotech)
Module : BT 701
Topic : Growth Kinetics
Designation : Lecturer
Semester : VI
Designation : Lecturer
Semester : VI
Designation : Lecturer
Semester : VI
Determining the number of viable cells by dye exclusion : Dye exclusion involves mixing an aliquot of the cell
suspension in a volume of buffer or balanced saline containing a water-soluble (membrane lipid-insoluble) dye (e.g.
0.4% Erythrosin B, or Trypan Blue) that is visible when it leaks into cells that have damaged plasma
membranes. By counting total cells and stained cells (damaged cells) one can calculate the per cent viability.
Recently, a device has come on the market which automatically counts viable and dead cells as stained by Trypan Blue,
using the techniques of microscopy and irriage analysis. One should be cautious in interpreting cell 'viability' by dye
exclusion. Dye uptake marks cells that have grossly disrupted membranes and may not detect other forms of
injury that affect cell attachment or may progress to cell death. Also, this method does not account for cells that
have fully lysed (i.e. are no longer identifiable as cells). In addition, the choice of dye may influence results. Trypan Blue
has a greater binding affinity for protein in solution than for injured cells, and should only be used in protein-free solution.
Fluorescence in situ hybridization (FISH) involves the hybridization of appropriate DNA probes with the DNA in the host
cell chromosomes. The probe is labelled non-isotopically by incorporating nucleotides which have been modified with
molecules such as biotin or digoxigenin, which are then detected with a fluorochrome-labelled antibody against the biotin
or digoxigenin. The location and extent of amplification of both recombinant and non-recombinant genes can be detected
in metaphase spreads even when the sequences are only present in a single copy.
Chromosome painting (or spectral karyotyping, SKY) involves the use of a collection of probes which are chromosomespecific. These paints are available commercially from a number of suppliers, and are produced such that each
chromosome can be labelled with a different colour. This allows complex translocation events to be detected and
analysed even when only small fragments of a chromosome are rearranged.