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Research Article
Abstract
High quality DNA extractions are a prerequisite for genetic studies for a variety of plants including
Plectranthus forskohlii. Nowadays, there are great number of plant DNA extraction method and
commercially available extraction kit are also becoming more and more popular. It appears that different
procedures work best for different plant groups. Thus, in the genetic studies of P. forskohlii, which DNA
extraction method to choose becomes a concern. To solve this problem, three classic plant DNA isolation
methods, including commercial kit was also undertaken. The DNA extracted by these three methods from
fresh young leaf tissue of P. forskohlii were analyzed according to their cost and time, yield, purity, integrity
and PCR (Polymerase Chain Reaction) based downstream analysis. After the evaluation, one most suitable
modified method was selected and chosen for isolating DNA from young leaves of P. forskohlii. The cost
and time required in this method was relatively low. In addition, the quantity and quality of the DNA
extracted by this method were high enough to perform hundreds of PCR based reactions.
Key words: Plectranthus forskohlii,
isolation and Comparative analysis.
Article History
Received : 02.07.2015
Revised : 10.08.2015
Accepted : 15.08.2015
1. Introduction
DNA
Ganapathy Murugan Alagu Lakshmanan / Life Science Archives (LSA), Volume 1, Issue 4, Page 208 - 216, 2015
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DNA
Ganapathy Murugan Alagu Lakshmanan / Life Science Archives (LSA), Volume 1, Issue 4, Page 208 - 216, 2015
quantitative
analysis
of
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Name of the
Standard
solutions
concentration
Suspension Buffer
EDTA
50 mM
Tris HCl
120 mM
NaCl
1M
Sucrose
0.5 M
Triton-X 100
2%
B-mercapto ethanol
0.2 %
High Salt TE Buffer
NaCl
0.5 M
Tris-HCl
10 mM
EDTA
1 mM
Modified concentration
20 mM
100 mM
1.5 M
1M
2.5 %
1.5 %
1M
20 mM
2 mM
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Table 2: Comparison of quality and quantity of genomic DNA isolated from fresh and dry leaves of
P.forskohlii
S.
No
Methods
Fresh leaves
DNA
A260/A280
yield (g/g)
Dry leaves
DNA
A260/A280
yield (g/g)
Commercial kit
1.570.04
1.450.07
1.470.26
1.330.08
Standard CTAB
22.141.85
1.720.03
17.741.94
1.650.07
Sahu et al.
(2012) Method
89.132.81
1.930.07
64.560.83
1.850.07
Primer
OPW 06
OPW 07
OPW 08
OPW 09
OPW 10
OPU 16
OPU 17
OPU 18
OPU 19
OPU 20
Sequences
5-AGGCCCGATG-3
5-CTGGACGTCA-3
5-GACTGCCTCT-3
5-GTGACCGAGT-3
5-TCGCATCCCT-3
5-CTGCGCTGGA-3
5-ACCTGGGGAG-3
5-GAGGTCCACA-3
5-GTCAGTGCGG-3
5-ACAGCCCCCA-3
Absorption spectrum of DNA isolated from dry leaves of P. forskohlii by using Sahu et al. (2012) Method
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3 21
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Fig. 2: Polymerase chain reaction using OPW primers on DNA from leaves samples of P.forskohlii by
different methods
4. Conclusion
5. References
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