P-450 Enzymes:
In Vitro Assessment
and Clinical Implications
P. Clement
1. Introduction
Over the last 30 yr, in vitro assessment of interactions between
drugs and drug-metabolizing enzymes has developed from a scientific curiosity to a topic of major clinical and commercial importance.
For clinicians, knowledge of this area assists in the ability to predict
the likelihood of a drug-drug interaction, or may help explain certain cases in which there is unexplained toxicity or lack of efficacy.
For the pharmaceutical industry, selection of appropriate compounds
for further preclinical and clinical development is a critical issue. This
chapter will introduce some basic concepts about the most important drug-metabolizing enzyme system in humans, the cytochrome
P-450 (CYP-450) family of enzymes, with the emphasis on in vitro
methods of assessment,and how these correspond with clinical studies.
1.1. Overview
of the Cytochrome
33 Cell Neurob,o/ogy
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and A N Bateson 0 Humana
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195
196
Glue
and Clement
endoplasmic
reticulum
and mitochondria.
In humans,
they are
synthesized
predominantly
in the liver, and to a lesser extent in
the small intestine, kidney, adrenals, and other sites (Krishna and
Klotz, 1994). The term P-450 was based on their initial identification as a red liver pigment
(I) that produced
a characteristic
absorption
spectrum peak at 450 nm when reduced and bound to
carbon monoxide
(Garfinkel,l958;
Omura
and Sato, 1962). The
genetics of these enzymes have now been extensively
studied, with
characterization
of several hundred
gene sequences from many
species. Comparison
of CYP-450 gene sequences from bacteria to
humans indicate that the ancestral CYP-450 gene is over 3.5 billion
yr old (Nelson et al., 1993). One amino acid sequence (a 26-residue
region near the carboxy-terminus
of all CYP-450 proteins, which
is the heme-binding
domain)
has been found m some bacterial
and virtually
all eukaryotic
cells (Nebert and Gonzales,
1987) A
standard
naming
system has also been developed
for CYP-450
enzymes (Nelson et al., 1993). The abbreviation
for cytochrome
P-450 (CYP) is followed by a number denoting
the gene family, a
letter indicating
the subfamily,
and another number
referring
to
the enzyme (e.g., CYP2D6). Enzymes with 40% or greater sequence
identity
are included
in the same family (in this case, family 2),
and within this family, enzymes with greater than 55% sequence
identity
are mcluded
in the same subfamily
(D). Within the subfamily, enzymes are assigned numbers on an arbitrary basis. There
are now at least 36 CYP gene families,
of which 12 are known to
exist in all mammals
(Nelson et al., 1993).
1.2. Clinically
Relevant
CYP-450
Enzymes
that May
Influence
CYP-450
Activity
Enzymes
tolbutamide
4hydroxylation
phenytom
fluconazole
ketoconazole
Table 1
Important
s-mephenytoin
4-hydroxylation
ketoconazole
Yes
rifampicm
omeprazole
diazepam
imipramme
hexobarbital
yes
CYP2C19
with
7-ethoxyresorufm
0-deethylation
m vitro enzyme
selective assays
cimetidme
fluoroqumolones
cigarette smoke
barbecued meat
omeprazole
Yes
barbiturates
rifampicin
tolbutamide
phenytom
S-warfarm
theophyllme
caffeine
acetammophen
yes
possible
CYP2C9/10
CYP-450
possible
Human
some malor
mhibitors
mducible
some major
inducers
genetic
polymorphism
some malor
substrates
CYPlA2
Malor
Inhibitors,
dextromethorphan
Odemethylation
cimetidme
most SSRIs
neuroleptics
TCAs
quuudme
possible
rifampicin
carbamazepme
phenobarbital
propranolol
encamide
TCAs and SSRIs
neuroleptics
(many others)
yes
CYP2D6
Substrates,
chorzoxazone
hydroxylation
disulfiram
ethanol
yes
alcohol
halothane
probable
CYP2El
and Inducers
6p-
cyclosporm
erythromycm
nifedipme
estrogens/progestms
somebenzcdiazepmes
quuudme
(many others)
yes
barbiturates
carbamazepme
phenytom
rifampicm, others
cimetidme
erythromycm
ketoconazole
fluconazole
ethmyl estradiol
progestins
testosterone 6phydroxylation
dextromethorphan
N-demethlyation
benzphetamme
N-demethlyation
CYP3A4
198
Glue
and Clement
environmental
factors. Studies on genetic influences
on enzyme
activity have concentrated
on CYP2D6 and CYP2C19, because of
well-established
genetically
determined
differences
in activity of
these enzymes. To assess activity of these enzymes clinically,
sublects are administered
a substrate which is selective for an enzyme
(e.g., debrisoquine
or sparteme
for CYP2D6,
mephenytoin
for
CYP2C19), and its rate of metabolism
is determined
from the ratio
of urinary concentrations
of parent to metabolite.
These ratios are
bimodally
distributed
within populations:
The majority
of subjects with normal rates of metabolism
are classified as extensive
metabolizers,
and a minority
with reduced metabolism
are called
poor metabolizers.
This difference in activity is also known as
genetic polymorphism,
and prior to the development
of clmical
or in vitro methods for assessing enzyme activity, the recognition
and identification
of subpopulations
of poor metabohzers
provided the first evidence for the involvement
of these enzymes in
the metabolism
of certain compounds.
A range of genetic mutations have been identified
to account for these metabolic
changes
(Dahl et al., 1992; Ieiri et al., 1996). The prevalence
of poor
metabolizers
for CYP2D6 and CYP2C19 in different populations
has also been extensively
studied (see Evans et al., 1980; Wilkinson
et al., 1989). Studies in animals and humans of different ages have
shown marked alterations
in expression
of CYP-450 enzymes in
liver tissue. However, these results are highly species-specific,
and
changes noted in animals cannot be assumed to occur in humans.
In humans, there is prelimmary
evidence that CYP3A4 activity is
lowest in neonates and increases to maximal
levels m adulthood
(Ratanasavanh
et al., 19911, and that activity of CYP3A4, but not
CYP2D6 or CYP2C19, appears to decrease between 20 and 80 yr
of age (May et al., 1994). Expression
of some CYP-450 enzymes
may be increased in certain age groups (e-g, CYP3A7 in fetal liver;
Schuetz et al., 1994).
Studies into the effects of gender on enzyme activity in humans
are limited.
Compared
with males, females appear to have greater
activity
of CYP3A4 and CYP2C19, similar CYP2D6 activity,
and
decreased
CYPlA2
activity
(see Harris et al., 1995). CYP-450
activity may be altered in certain diseases such as acute viral illnesses (Soons et al., 1992), chronic liver disease (el-Yazigi
et al.,
1995; Murray,
19921, and potentially
in patients
with thyroid
abnormalities
(McClure
and Stupans, 1995). Of the environmental
factors studied,
drugs, diet, and lifestyle
are important
factors
Cytochrome
P-450 Enzymes
199
Assessment
of CYP-450
Activity
200
Metabolism
Cytochrome
P-450
Enzymes
201
in subcellular
assays, and the number
of highly specific inhibitory antibodies
is limited.
Most recently, in addition
to the identification
of the enzymes responsible
for the metabolism
of test
drugs, researchers have determined
the kinetic rate constants (Km)
for individual
enzymes, and have used this information
together
with the relative abundance
of the enzymes m liver to predict the
clinical relevance (i.e., contribution)
of specific enzymes to a drugs
metabolism
(see Black et al., 1996; Kunze et al., 1996; Kunze and
Trager, 1996).
2.1.2.
inhibit/on
The potential
for a test drug to inhibit selected CYP-450 enzymes
can be assessed by examining
its effects on the rate of metabolism
of probe substrates specific for particular
CYP-450 enzymes
A
list of substrates used in in vitro studies is provided
in Table 1
(for a more extensive list see Parkinson,
1996). A range of concentrations of the test drug are incubated
with the substrate and its
rate of metabolism
compared
with a test-drug-free
control assay,
reduced metabolite
and increased probe substrate concentrations
would indicate inhibition.
For enzyme-specific
metabolism,
the
kinetics of the inhibition
reaction (Ki) can be determined
and this
information
may be used to predict the clinical significance
of the
in vitro findings.
2.1.3.
Induction
Evidence
for the ability
of a test drug to induce
CYP-450
enzymes may initially
come from toxicology
studies in which animals (rodents, dogs, nonhuman
primates)
are administered
multiple doses over a specified length of time (2 wk, 1 mo, 3 mo, and
so on). Parameters
that may indicate enzyme induction
include
increases in absolute or relative liver weight, microsomal
protein
and CYP-450 content, and the activity of selected CYP-450 enzymes
(e.g., substrate-specific
assays). More recent studies have included
determination
of liver microsomal
(endoplasmic
reticulum)
content of specific enzymes
or accumulation
of enzyme-specific
mRNA. Increases in the activity of specific enzymes together with
mcreases m the associated
protein
and mRNA
levels for that
enzyme would be evidence of induction.
Extrapolation
of results
from toxicology
species to humans
remains
difficult.
Rodents
appear to be more responsive to inducers, and the induction
process (i e , signaling
at the nuclear level) is not well understood
202
Glue
and Clement
and may vary across different species. Investigators are now using
cultured human hepatocytes to screen for induction, but further
work will be required to establish the clinical relevance of these
in vitro findings.
2.2. Practical in Vitro Assessment
of fhe CYP-450 Profile of a New Compound
Pharmaceutical companies synthesize thousands of new compounds every year. Based on indices of activity in screening paradigms, a handful of these compounds will be selected to be studied
in greater detail to determine their suitability for eventual clinical
development. Certain aspects of metabolism can be identified that
can assist in the selection process. For example, a drug that is not
metabolized will be preferable to one that undergoes extensive
metabolism, as the latter is likely to have greater pharmacokinetic
variability; toxicological assessment is also less complicated for
compounds that are not extensively metabolized. Drugs that do
not induce or inhibit CYP-450 enzymes at relevant concentrations
are preferable to drugs with these activities (with a few exceptions such as triazole antifungals, in which CYP-450 inhibition is
central to therapeutic activity). Enzyme inhibition is a potentially
more serious problem for a drug than is evidence of induction.
Clinically, induction may result in loss of efficacy as a result of
reduced concentrations of an affected substrate, whereas inhibition may produce substrate accumulation and toxicity; thus evidence of significant enzyme inhibition is rarely a positive feature
for compounds in development. Finally, the specific enzymes
involved in the metabolism of, or that are inhibited by a drug are
also important; compounds that are not metabolized by or that
do not inhibit CYP3A4 or CYP2D6 will not have interaction problems with the majority of other drugs currently available.
Based on the above, a practical method for assessment of test
compounds will be described. This is summarized in Fig. 1. This
approach addresses two issues: does the test compound inhibit
specific CYP-450 enzymes, and can the metabolism of the test compound be inhibited by coadministered drugs? The first step is to
incubate a wide range of concentrations of the test compound with
pooled human liver microsomes and enzyme-selective substrates,
where the substrate concentration in each incubation mixture is
approximately equal to the Km for the specific reaction being
examined (see Table 1 for examples of substrates). These methods
Cytochrome
P-450
Enzymes
Flowchart
does test drug mhlblt
metabolism
of model
substrates?
ICSO <200uM
200~500uM
which enzymes
CYP460
fi
ntatabolite
Ml
203
Technique/
Measurements
Clmical
Significance
metabok
stud.es wth enzymewecific subsfretes
>500uM
metaboka
M2
I d of enzymes affected
IC50
KI
type of mhlbltmn
correlation analyses ,
rncubabon wth specrhc enzymes
+ mhrbrforsfanbbodfes
Mll
-potential
for mhlbltlon of
test drug by other
compounds,
and possible
clm~cal slgmhcance,
- posslblllty of genebc
polymorphic
metabolism
CLmt (VmaxIKm)
enzyme
will
be reduced.
Based
which
are clinically
relevant.
with
an IC,, of less than 200 PM, the Ki for the test compound should
be determined. For drugs with IC,, values between 200-500 pM,
decisions can be made on a case-by-case basis.
Determination of the Ki value for inhibition of a specific CYP450 enzyme is carried out in a similar manner. In this case, at least
three concentrations of the enzyme-selective substrate (i.e., 1/4X,
204
Glue
and Clement
1X, and 4X Km) are used in assays with at least 5-6 concentrations of the inhibitor
(which would
bracket
the IC,, value).
Activities
of the enzyme at the substrate concentrations
are plotted against inhibitor
(test drug) concentrations
(Lineweaver
Burk
reciprocal
plots) and the Ki value determined.
The nature of the
inhibition
can also be determined
(competitive,
uncompetitive,
noncompetitive)
from the plots. The Ki value along with the projected plasma concentrations
of the test drug at projected
clinical
doses ([I]) can then be used to predict the extent of in vivo mhibition of the affected pathway.
For example,
if the test drug is a
noncompetitive
inhibitor
the % inhibition
will be equal to
([II/[11
whereas
if the Inhibition
([I]/[11
+ Ki) x 100
is competitive
+ Ki [l + S/Km])
the % inhibition
would
be
x 100
Cytochrome
P-450
Enzymes
205
studies
206
by CYP-450 Enzymes
To determine if a test compound is metabolized by certain CYP450 enzymes, it can be administered to subjects in combination with
a specific enzyme inhibitor (seeTable 1 for examples), or if CYP2D6
or -2C19 are thought to be involved in metabolism, to subjects identified as poor and extensive metabolizers for these enzymes. In the
former type of study, concentrations of the test compound are measured before and during treatment with the inhibitor. In the latter
type of study, the ratio of parent to metabolite is measured in urine.
In both studies, elevated concentrations of parent and/or reduced
concentration of metabolite (or an increased parent:metabolite ratio) is evidence that the particular enzyme is involved in the test
drugs metabolism. As discussed above, the use of in vitro techniques has made these methods redundant for the assessment of
new drugs. Problems associated with clinically derived data are
discussed at length elsewhere (Glue and Banfield 1996).
3.2. Inhibition
and Induction
Cyfochrome
P-450
207
Enzymes
include dextromethorphan
for CYP3A4 and -2D6, caffeine for
CYPlA2, tolbutamide
for CYP2C9, and S-mephenytoin
for
CYP2C19 (see Table 1). Whereas this is an efficient approach to
assessment, this technique has been criticized for several reasons
including possible pharmacokinetic and/or pharmacodynamlc
interactions of probe drugs, and the invasiveness of the multiple
blood draws needed for pharmacokinetic analysis (Bachmann,
1996). An alternative strategy, handprinting,
has been proposed,
where probe drugs are administered sequentially (rather than
simultaneously) and indices of changes in enzyme activity may
be derived from single plasma sample clearance estimates
(Bachmann, 1996). As yet this technique has not been widely used,
and there are no comparative data with cocktail probe testing
to determine what, if any, advantages this approach offers.
The above techniques are a considerable advance over older
methods assessing enzyme-inducing or -inhibiting effects of test
compounds by examining rates of metabolism of probes such as
antipyrine or 14C-aminopyrine, or excretion of endogenous substances such as d-glucaric acid or 6-B-hydroxycortisol (see Barry
and Feely, 1990). The production or metabolism of these compounds was not specific to a particular CYP-450 enzyme, or
involved non-CYP-450 pathways such as glucuronidation
(Barry
and Feely, 1990; Engel et al., 1996).
As mentioned in Sections 3.1. and 3.2., the methods described
assess phenotype. However patients may already be established
on medication that could alter CYP-450 activity and would complicate the interpretation of results or the assessment of phenotype status. The advent of new DNA-based (genotypic) screening
techniques that use lymphocyte genetic tissue and do not require
probe testing and are not affected by concurrent medication may
be an effective method of testing for genetic polymorphisms
(Chen et al., 1995; Heim and Meyer, 1990). Genotype testing is
still a research tool, but may become clinically established in the
near future (see Chen et al., 1996).
3.3.
Clinical
Confirmation
of in Vitro
CYP-450
Dafa
208
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