FLR

Varian
Cary Eclipse
Fluorescence
Spectrophotometer

NOTICE: This document contains references to Varian.

Please note that Varian, Inc. is now part of Agilent
Technologies. For more information, go to
www.agilent.com/chem.

Cary Eclipse Fluorescence

Spectrophotometer

Who is Varian?
Varian, Inc. has been supplying essential
tools for scientists engaged in drug
discovery, life science, genetic engineering,
neuroscience studies, health care,
environmental analysis, industrial R&D and
quality control, and academic applications
for over 50 years. Our range of UV-VisibleNIR spectrophotometers, fluorescence
spectrophotometers, NMR spectrometers,
NMR imaging spectrometers, gas
chromatographs, gas chromatograph/mass
spectrometers, high-performance liquid
chromatographs, atomic absorption
spectrometers and inductively coupled
plasma spectrometers are supported by
extensive consumable supplies and services
that will keep your laboratory running
efficiently. We are a global organization
with offices or dealers in over 70 countries.
How does Cary fit in?
The Cary name has been associated with
high performance spectrophotometers for
over 50 years. From the Cary 11 introduced
in 1947 to the Cary 50, 100, 300, 400,
500 families introduced in 1997, the name
Cary has been synonymous with excellence
and performance. Cary instruments have
become the standard for researchers
wanting to push the limits of their
measurement techniques. Cary instruments
have also found a home in many of the
routine laboratories around the world
where their reliability and ease-of-use are
vital. The Cary Eclipse fluorescence
spectrophotometer fits well within the Cary
range, offering the excellent specifications
and modern software that has become the
Cary standard.

Whats inside?

The Cary Eclipse fluorescence

spectrophotometer was designed from the
ground up, incorporating the latest optical
and electronic technology. Included as
standard are features such as corrected
spectra, excitation and emission filters and
extended range PMT detectors, so there
wont be any nasty budget surprises.
Optional accessories such as the peltier
thermostatted multicell holder and the
microplate reader extend the capabilities
of the instrument. With the flick of
your wrist you can convert from using
a standard cuvette to measuring a
384 well microplate.

Excellent sensitivity is
a result of using an
intense Xenon flash
lamp, coupled with
optimized grating blaze
angles and coatings
which ensure sensitivity
across the whole
wavelength range.
Photosensitive samples
are not exposed to
continuous light as the
Xenon flash lamp
flashes only to acquire
a data point.

Reduced volume
cuvettes (40 L and
400 L) are available.
The horizontal beam
profile ensures
excellent sensitivity
even with such
low volumes.

The large sample

compartment makes
it easy to install and
remove accessories.
You have plenty of
room to fit your own
research apparatus.
We can even provide
a baseplate for you
to build upon.

The Schwarzchild
collection optics
capture a large portion
of the light from the
powerful Xenon flash
lamp and direct it
through the sample.
This results in excellent
sensitivity and low
signal noise.

Scan fastthe whole

wavelength range in
less than 3 seconds.

Red-sensitive
Photomultipler tube
detectors extend
sensitivity up to 900 nm
without sacrificing
UV performance.

The Cary Eclipse

occupies only 600 mm
(24 inches) of
bench space.

The Xenon flash lamp

and sophisticated
signal processing gives
the Cary Eclipse
room light immunity
for fluorescence
measurements.
Sample size need no
longer be a restriction.
Just leave the sample
compartment open
whilst collecting data!

Various built-in
filters on both
monochromators means
that you dont have
to buy your own to
minimize scattering or
exclude second-order
stray light.

Cary Eclipse Software

something for everyone

Single window
operation: All controls
can be accessed from
this window, making
operation quick
and easy.

Having trouble figuring

out what a particular
button or control does?
Just hold the mouse
pointer over the object
until the hint text pops
up with an explanation.

Power-users can use

the built-in
spectroscopy language,
the Applications
Development Language
(ADL), to automate
your laboratorys
measurements.
Not-so-power-users
can download these
highly customized
methods from
Varians website
www.varianinc.com

Create an icon for your

common measurements.
A double-click on the
icon loads the
appropriate application
and method.
6

The Cary Eclipse can

email you when the
data collection is
finished-with or without
the data file attached.

Data can be
automatically exported
to a spread sheet at the
end of the measurement.

The Cary Eclipse

software features
toolbars to give you
quick access to the
most common graphics
and report operations,
including: zooming,
cursor, adding text,
changing axis ranges,
drawing contours, and
previewing reports.

Prepare to publish!
You can cut and paste
graphs from the Cary
Eclipse software into
any word processing
package, including any
bitmaps or text you
may have added to
the graph.

Status display shows

you the current
instrument parameters
at a glance.

You can store all

method and report
parameters, calculations
and graphical displays
and the actual data in
one file. This saves time
as you simply recall one
file instead of several.

The Cary Eclipse

software includes
step-by-step video
clips for hardware
installation and use.

Cary Eclipse SoftwareScan

Three different packages

of the Cary Eclipse
software are available:
Scan, Bio and Conc.
The Cary Eclipse software
is designed in modules,
each meeting a different
analytical requirement. For example,
the Scan module only does wavelength
scanning and the kinetics module presents
the user with controls appropriate only for
time-based data collection. This modular
approach reduces training time as only
the options appropriate for that type of
analysis are presented to the user, instead
of a bewildering array of menus and
selections. The Scan package contains the
following modules: Scan, Simple Reads,
Advanced Reads, Align, GLP Admin,
Validate, System information and ADL Shell
(for more information about each of these
modules, refer to the Cary Eclipse
specifications brochure).
The Scan package has a host of special
features that will allow you to get the
maximum information from your samples:
Signal-to-noise mode is a unique method
of collecting data that allows you to
control the level of precision you want
across the whole scan. The instrument
will scan quickly in areas of high emission
and slow down in areas where the
emission is less.
CAT scan mode: Not sure of what
averaging time to use? Just average a
number of individual scans until you are
happy with the signal to noise resolution

Corrected excitation and emission

spectra up to 600 nm are provided at
no additional cost. Corrected spectra
up to 900 nm is optional. And you can
also view the correction factors in
ASCII format!

The Cary Eclipse fluorescence

spectrophotometer is able to scan at
24 000 nm/min without peak shifts due
to the design of the monochromator
drive mechanism. The grating is moved
only when the lamp is off, resulting in
a go-stop-flash method of taking a
measurement. The wavelength does
not change whilst a measurement is
being taken.

Included in the wide

range of Cary Eclipse
accessories is a fibre
optic system suitable
for measuring the
emission from the
surface of a solid or
that emitted by a
liquid. With the
unique feature of
fluorescence room
light immunity,
the Cary Eclipse fibre
optic system is the
most sensitive remote
reading solution
available today.
No restrictions means
that measuring samples
has never been easier,
or more fun!

You can elect to scan

in wavelength,
wavenumber,
angstroms or electron
volts. The wavenumber
option is linear-the
instrument is driven
so that the
wavenumber (not the
wavelength) interval
is constant.

Three modes of
operation are offered:
fluorescence,
phosphorescence and
bio-/chemi-luminescence.

Obtain a 3-D graph or

contour plot in seconds!
Use the 3-D mode to
automatically collect
a series of excitation,
emission or synchronous
scans in all X modes.
Just sit back and let
the Eclipse do all
the work!

Record fine structure

information in spectra
by using the minimum
resolution of 1.5 nm.
And for broad band
solution spectra,
20 nm SBWs are
available to achieve
maximum sensitivity.

Create an excitation/
emission matrix (EEM)
or 3-D plot to see
exactly what is
happening in your
sample, e.g., what
happens to the emission
intensity as the
excitation wavelength
is changed? A 3-D plot
shows you the
interaction between
emission wavelength,
excitation wavelength
and fluorescence
intensity. The 3-D data
can be sliced to
produce single
excitation or emission
scans, or contour plots
can be created to
show the number of
emitting species.

Perform synchronous
scans with a constant
wavelength or
wavenumber difference
between monochromators
to resolve multicomponent mixtures

If you want precise

control over how much
signal averaging is done
and how frequently
data points are
collected then you can
choose to set both the
Averaging time and
the Data interval. If
you would prefer that
they be automatically
set for you then just
select how fast you
want to scan. You can
also elect to perform
real-time smoothing
of the data.

Cary Eclipse SoftwareBio

Cary Eclipse
software-Bio
The Bio package
contains the following
modules: Kinetics, Lifetimes,
Scan, Concentration, Simple
Reads, Advanced Reads, Align, GLP
Admin, Validate, System information
and ADL Shell (for more information
about each of these modules, refer to the
Cary Eclipse specifications brochure).
The Cary Eclipse provides some unique
capabilities, including:
Fast Kinetics
The Cary Eclipses electronic design,
coupled with the use of the Xenon flash
lamp, allows steady-state fluorescence
data to be collected at up to 80 points
a second. Use the rapid mix accessory to
analyze reactions that are over in less
than 1-2 seconds.
Data security guaranteed
Some spectrophotometers only store data
at the end of a run, so if the power fails
during the analysis you have to start again.
The Cary Eclipse software stores data as it
is acquired, so even if someone accidentally
pulls the power plug, youll still have the
data up to that point.

10

Can I vary the data collection rate?

If you have a reaction which starts off very
fast and then slows you may want to collect
data at different rates over the course of
the reactionfast at the start (up to 80 data
points per second) and then slower during
the later part of the reaction. You can
specify multiple data collection rates for
different time segments of the assay.
The Kinetics software also caters for long,
slow reactions with the ability to collect
data for up to 20 000 minutes without the
restriction of a limited number of data
points in a file.

Need an extension?
If you decide during an assay that you set
an incorrect end time, you can extend the
length of the assay without stopping the
measurement. You can also use the pause/
continue function to add reagents without
introducing spikes in your data by opening
the sample compartment lid.
Why do 4 experiments when you
can do 1?
The Dwell time option in the Kinetics
software allows you to measure multiple
data points per cell before moving to the
next cell. Use the multicell holder to
monitor four very fast reactions in the
one experiment.
Intracellular ion concentrations
Intracellular ion concentration analysis or
pH measurements are also possible with the
Cary Eclipse. Using the fast slew rate of the
monochromators, data can be acquired and
displayed in real time within a second for
ratiometric measurements or every 12.5 ms
for single wavelength dyes.

Rotational motion of molecules

The Cary Eclipse has available UV
transmitting film polarizers allowing
excitation down to 275 nm, so even
tryptophan can be excited. The use of the
flash lamp means that you do not have to
worry about photobleaching. The polarizers
are easily cleaned and maintained, thanks
to their sturdy design. With an extremely
low extinction ratio in the cross-position,
rotational motion of proteins and solvent
interactions can be measured with high
precision and accuracy. The Cary Eclipse
polarizers also allow measurements to
be obtained at the magic angle of 55 as
well as the complimentary angle of 35.
Time-resolved measurements
Phosphorescence and delayed fluorescence
lifetime measurements, e.g. Europium, are
made easy using the Lifetimes application.
Sophisticated data acquisition electronics
coupled with the flash lamp allows data
to be collected real time for gate times
> 50 s. And for decays that are even faster,
a minimum gate time of 1 s is also
available. Low emitting samples are also
measured with ease. To improve the Signal
to Noise just average a series of individual
decay curves or pump up the intensity by
increasing the number of flashes prior to
data collection. Single or double exponential
fitting procedures are also possible with the
built-in data analysis algorithms.

Perform time-resolved
measurements with
a 2 s gate time!
This example shows
the time-resolved
fluorescence decay
of Europium (III) over
a 2 ms time period.
In being able to
collect 1000 data
points, rate calculations
can be performed
with a high precision
and accuracy.

The microplate reader

can easily scan cells
adhered to the side
of a well, with good
signal to noise.
This figure shows an
emission scan of
Rhodamine B which has
been coated to the side
and bottom of a 384
well white microplate.

11

BioOpening up new horizons

in Life Science research

Measure and heat multiple samples

simultaneously
The Cary Eclipse can be fitted with a peltier
thermostatted multicell holder to allow
the simultaneous measurement of up to
four samples.
Stirring is smooth and easy to control
If your samples contain whole cells or
particulate matter you will need to stir the
solution during the measurement to ensure
that the reactants are constantly mixed.
The stirring mechanism of the Cary Eclipse
thermostatted cell holders relies on a
rotating magnetic field, generated by an
alternating electric current. This ensures
reliable operation with no fluctuations in
stirring speed and allows complete control
over the speed of the stirring. All 4 cells can
be stirred at a constant rate for extended
periods of time.
Excellent temperature control
The temperature in the multicell holder is
electro-thermally controlled by peltiers.
Peltiers are electrical heat pumps which
transfer heat from one place to another
and offer the rapid and precise temperature
control which is essential for controlling
the intensity of fluorescence emission.
The temperature control of the peliter
thermostatted cell holders is extremely
stable over time, with a typical variation
being 0.05 C. The cell to cell variation
is also minimal with a maximum difference
of 0.2 C at 37 C.

12

The use of peltiers gives you complete

control over temperature ramping for
thermal denaturation and renaturation
studies of DNA via Fluorescence Resonance
Energy Transfer (FRET). The optional
Temperature probe allows you to measure
the temperature of the solution inside the
cuvette. Depending upon the ambient
conditions in your laboratory and the
thermal conductivity of your cuvettes and
the sample, there can be a significant
temperature difference between the cell
holder and the solution inside the cuvette.

Flick! Now Im a microplate reader.

The easily-installed Microplate reader
accessory turns the Cary Eclipse
fluorescence spectrophotometer into a
Microplate reader in less than 30 seconds.
The system achieves high throughput with
excellent sensitivity by using reflective
optics instead of fibre optics to focus the
light onto each well. Some of the microplate
readers exciting features include:
Speed: measure 96 wells in less than
50 seconds and 384 in less than 90
seconds!
Full wavelength scanning: Unlike many
dedicated microplate readers that require
the use of the correct filter to match your
fluorescence probe of interest, the Cary
Eclipse can perform a full wavelength scan
on each well within minutes. Microplate
samples can be measured in steady-state
fluorescence, phosphorescence,
bio-/chemi-luminescence or time-resolved
delayed fluorescence modes.
All of the Eclipses measurement
capabilities can be used with the
microplate reader system. This includes
continuous monitoring kinetics, single
intensity readings or even average
multiple readings per well and wavelength
scanning. If you are a researcher wanting
the ultimate flexibility then the built-in
Cary Applications Development Language
(ADL) will allow complete customization
of the way you want to collect your data
and report the results.
If you have a non-standard microplate
or substrate then you can customize the
measurement positions. The image spot
size can be controlled using the spectral
bandwidth selection with the smallest
image size being 2 mm in diameter.

The optical design allows for

measurements of minute sample
quantities deposited on the sides or base
of the wells.
The Auto-align feature in the software
will align the excitation beam on your
microplates automatically. The process
takes about a minute and the
information about each plate type is
stored automatically.
The microplate reader can be used as
an x-y transport if you want to measure
samples other than microplates. Gels,
films and solids can easily be measured
at various locations on their surface.

13

From ownership to partnership

What about GLP compliance?

The Cary Eclipse software is Good Laboratory
Practise (GLP) compliant*. To make GLP
compliance easier, the software offers a
range of functions. For example, a desktop
shortcut can be setup to startup an
application and load a particular method.
This means that if the laboratory routinely
runs three different quantitative analyses,
three icons can be setup on the desktop,
one for each analysis. The operator then just
clicks on the appropriate icon.
How do I get help if I have a problem?
Varians global reach makes it easy for you
the get answers for any problems you may
have. You will have access to many
resources including:

The Validate software

makes it easy to test
your instrument
just select the tests
you want to do and
walk away.

14

How do I know if my Cary Eclipse is

working correctly?
The Cary Eclipse instruments are equipped
with a range of tools to make checking
your instruments performance easy.
Supplied with each package is the
Instrument Validation application.
This software automates the testing of the
instrument hardware* and contains the
most comprehensive suite of tests offered
by any manufacturer today.
Can I get my instrument recertified?
At installation your instrument will be
checked against specifications. As part of
your ongoing validation program you may
want to have your instrument recertified,
to ensure that it is still meeting those
specifications. Varian offers a recertification
service which involves an on-site visit from
a Varian Engineer who is equipped with
various traceable standards and other test
equipment. This means that you dont have
to purchase and maintain expensive
standard materials and if the instrument
needs adjustment, the engineer will fix it
for you.

Free access to other Cary Eclipse users

around the world via an Internet mailing
list. If you have access to Email then you
can ask any question you like, e.g., Has
anyone measured this type of sample
before? Your email will be automatically
sent to all other Cary Eclipse users who
subscribe to the list. Experts at Varian also
belong to this list, so you are assured of
getting the answer you need. Varian also
uses the mailing list to notify users of new
products and application notes etc.
You can call your Varian office and
get over-the-phone support or request an
on-site service call.
Varians web site contains many
application notes and frequently asked
questions. You can use these to find out
how to measure a particular sample or
how to optimize the use of your Cary
Eclipse. A visit to the web site will also
give you information on the latest
software and hardware releases.
If you need parts or supplies for your
Cary Eclipse then our web site has an
extensive list. If you arent connected to
the Internet then you can receive the
information on CD ROM.

Accessories to extend your capabilities

Safety
It is Varians policy to manufacture safe
products and to meet all legal
requirements governing the design,
manufacture and sale of safe products.
As with all similar products, some or all
of the following hazards may be present:
high temperatures, high pressure gases,
explosive gases, magnetic and radio
frequency radiation, UV light and
electricity. Each product is designed to
protect operators from potential hazards.
Varian supplies instructions which
describe the correct procedures for the
operation and maintenance of each
product. The Cary Eclipse fluorescence
spectrophotometer is designed to measure
the emission of light from materials.

Accessory mounting base

Automated polarizer

Fibre optic coupler

Fluorescence test kits

Manual polarizer

Microplate reader

Mount for Oxford

cryostat

PCB-150 peltier
water bath

Peltier and water thermo

multicell holders

Rapid Mix accessory

Single peltier cell

holder

Single water thermo

cell holder

Solid sample holder

Standard single cell

holder with base

Temperature controller

Temperature probe

* For details refer to the separate

Specifications brochure.

How easy is it to install and remove

Cary Eclipse accessories?
Simple. Each accessory features a
quick-release mechanism that fastens or
releases the accessory from the sample
compartment with a flick of your wrist.
The plug-and-identify electronics allows
the Cary Eclipse software to know which
accessory is installed and tailor software
options appropriately.

I have built my own accessories.

Can I use them in a Cary Eclipse?
All accessories are centrally controlled
by the Accessory Controller, built into the
Cary Eclipse instruments. Instead of each
accessory having their own electronics,
the Accessory Controller provides the
interface between the Cary software and
the accessories. If your custom-built
accessories will fit into a Cary, you can use
the Accessory Controller to control them.
Even external accessories, such as titrators,
lasers and pH meters can be controlled.

15

Visit Varian at www.varianinc.com

Varian Optical Spectroscopy Instruments

Mulgrave,Victoria, Australia
Tel (3) 9560 7133 Fax (3) 9560 7950
Varian Chromatography Systems
Walnut Creek, California, USA
Tel (510) 939 2400 Fax (510) 945 2102
Varian NMR Instruments
Palo Alto, California, USA
Tel (650) 493 4000 Fax (650) 852 9688
Sample Preparation Products
Harbor City, California, USA
Tel (310) 539 6490 Fax (310) 539 4270
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Lexington, Massachusetts, USA
Tel (617) 861 7200 Fax (617) 860 5437
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Leini (Torino) Italy
Tel (11) 997 9319 Fax (11) 997 9350
Specifications subject to change
without notice.
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Partnumber 85 101757 00
Australia 6/2006
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Sales offices
Australia
Varian Australia Pty Ltd
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Tel 1 300 368 274
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Varian Ges.m.b.H.
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Tel (1) 69 99 669
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Varian Canada Inc.
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Tel 1 800 387 2216
or (905) 819 8181
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Tel (0164) 282800
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United Kingdom & Eire

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