intermediates
Sven Panke1 and Marcel Wubbolts2
Biocatalytic synthesis of enantiomerically pure compounds for
pharmaceutical intermediates is gaining momentum. This is the
result of advances in genomics, screening and evolution
technologies leading to the increased availability of new and
robust biocatalysts suited for industrial-scale application, and
is stimulated by an increased demand for catalysts that are able
to address the increased complexity of active pharmaceutical
ingredients. The vast majority of biotransformation reactions for
the manufacturing of optically active pharmaceutical
intermediates are still based on enantioselective ketone
reductions and enantiospecific hydrolyses. This review aims to
point at alternative reaction types and integrated multienzymatic steps that are emerging in large-scale applications.
Addresses
1
Institute for Process Engineering, ETH Zurich, Sonneggstrasse 3,
ML K 23, CH-8092 Zurich, Switzerland
2
DSM Research, Advanced Synthesis Catalysis & Development,
P.O. box 18, 6160 MD Geleen, The Netherlands
Corresponding author: Wubbolts, M (marcel.wubbolts@dsm.com)
Introduction
The molecular complexity of active pharmaceutical
ingredients (APIs) is rising and is characterized by a
growing number of functional groups and chiral centers.
To synthesize an advanced intermediate (AI) to assemble
such a complex API requires catalysts that are highly
selective and that operate under conditions compatible
with frequently sensitive functional groups. Enzymes, as
highly selective catalysts operating under ambient conditions, are particularly suited for this purpose, and
numerous industrial applications have been reviewed
recently [1,25].
A long-known but illustrative example of an API with
multiple chiral centers created by biocatalytic means is
Omapatrilat, an antihypertensive drug that acts both as an
inhibitor of angiotensin converting enzyme and neutral
endopeptidase [5]. Omapatrilat contains four chiral
Current Opinion in Chemical Biology 2005, 9:188194
Figure 1
NH2
S
OH
OH
HO
O
O
N
H
HS
O
O
COOH
NH2
O
Omapatrilat
NH2
3
OH
O
1. D-amino acid oxidase
Catalase
2. Glutamate DH, NH3
Glucose DH, glucose
NH2
OH
NH2
OH
99% ee
HO
HO
O
O
Phenylalanine DH
Formate DH, formate
NH2
OH
OH
98% ee
O
SH
H2N
1. Lysine--AT, KG
Glutamate oxidase
2. Acid ring closure
H
N
H
5
70% yield
RHN
RHN
O
COOH
COOH
Several biocatalytic steps that have been developed by BMS for the synthesis of Omapatrilat. aKG, a-ketoglutarate; AT, aminotransferase;
DH, dehydrogenase.
N3 or CN to reopen the oxirane [7]. The latter nucleophile results in (S)-4-cyano-3-hydroxybutanoate ethyl
ester, which is a more advanced intermediate towards
Atorvastatin (Figure 2b) [8].
www.sciencedirect.com
Figure 2
F
OH
OH
O
OH
OH
OH
O
6
R
OR'
Atorvastatin
NHPh
(a)
OH
Cl
Cl
99% ee
OEt
O
(b)
OEt
1. ADH
2. Dehalogenase, HCN
OH
Cl
OEt
Nitrilase
OH
NC
96% ee
NC
OEt
(c)
OH
CN
O
96% ee
NC
OH
H3CO(O)C
O
(d)
1. -Chymotrypsin
2. PLE
OH
O
98% ee
HO
(e)
HO
OEt
A. calcoaceticus ADH
FDH, formate
BnO
OH
O
97% ee
OEt
DERA
OH
Cl
(g)
OH
BnO
OEt
(f)
OEt
OH
Cl
O
DERA S238D
OH
OH
O
[]D=72
(35% yield)
+
N3
97% de
N3
Current Opinion in Chemical Biology
Several published routes towards (ad) early and (eg) advanced intermediates towards HMGCoA reductase inhibitors (statins), such as
atorvastatin [6]. GDH, B. megaterium glucose dehydrogenase. ADH, alcohol dehydrogenase; FDH, formate dehydrogenase; PLE, pig liver
esterase; rec, recombinant.
Figure 3
OH
OH
7
HN
()-Ephedrine
O
(a)
Yeast (PDC)
CO2
N+
HO
HO
OH
H+
S
O
OH
10
8
(b)
O
Z. mobilis
PDC W392M
O
OH
8
O
Current Opinion in Chemical Biology
Carboligation of pyruvate or acetaldehyde and benzaldehyde to R-PAC (7) by (a) thiamine diphosphate-dependent pyruvate decarboxylases.
An activated acetaldehyde-cofactor intermediate (8) is formed that can give rise to by-products acetaldehyde (9) and acetoin (10). (b) Z. mobilis
PDC W392M is more specific and accepts acetaldehyde.
www.sciencedirect.com
Figure 4
CO2Et
HO
AcHN
COOH
HO
NH2
OH
GS4104
OH
(a)
O
HO
HO
(b)
COOH
HO
rec. E. coli
OH
OH
HO
OH
OH
O
HO
HO
(c)
OH
OH
rec. A. mediterranei
HO
HO
COOH
NH2
OH
O
HO
HO
(d)
COOH
rec. E. coli
OH
OH
HO
OH
OH
O
HO
HO
OH
OH
COOH
rec. E. coli
OH
OH
Current Opinion in Chemical Biology
Engineering the central metabolism and shikimic acid pathway of E. coli and other organisms to allow the accumulation of (a) shikimic acid and
(b) aminoshikimic acid as potential starting material for Tamiflu. (c,d) The trans-diols 3,4- and 2,3-trans-CHD are derived from the shikimate or
chorismate pathway as well.
Current Opinion in Chemical Biology 2005, 9:188194
www.sciencedirect.com
Conclusions
Biocatalysis has more to offer than providing a solution
when the chemistry doesnt work. The examples given in
this review go beyond more established enzyme classes
such as the hydrolases and ketone reductases, and illustrate the enormous potential of enzymatic catalysis in
single-step reactions, combined enzyme reactions and
metabolic engineering.
1.
2.
3.
4.
5.
6.
7.
8.
Davis SC, Grate JH, Gray DR, Gruber JM, Huisman GW, Ma SK,
Newman LM, Sheldon R, Wang LA: Halohydrin dehalogenases
and method for production of 4-cyano-3-hydroxybutyric acid
esters and amides. WO 2004/015132, (Codexis Inc.).
9.
www.sciencedirect.com