Paenibacillus abyssi

Strain identifier

BacDive ID: 130515 DOI: 10.13145/bacdive130515.20170425.1

Type strain: yes Designation: SCSIO N0306
Culture col. no.: DSM 26238, CGMCC 1.12987

Sections

Name and taxonomic classification

Culture and growth conditions
Isolation, sampling and environmental informationarrow
Molecular biology
Strain availability
References

Name and taxonomic classification

Ref.: 21717 Domain Bacteria

Ref.: 21717 Phylum Firmicutes
Ref.: 21717 Class Bacilli
Ref.: 21717 Order Bacillales
Ref.: 21717 Family Paenibacillaceae
Ref.: 21717 Genus Paenibacillus
Ref.: 21717 Species Paenibacillus abyssi
Ref.: 21717 Full Scientific Name Paenibacillus abyssi Huang et al. 2015
Ref.: 21717 Designation: SCSIO N0306
Ref.: 21717 Type strain: yes

Prokaryotic Nomenclature Up-to-date (PNU)

Ref.: 20215 Domain Bacteria
Ref.: 20215 Phylum Firmicutes
Ref.: 20215 Class Bacilli
Ref.: 20215 Literature reference Int. J. Syst. Evol. Microbiol. 60:469
Ref.: 20215 Family Paenibacillaceae
Ref.: 20215 Literature reference Int. J. Syst. Evol. Microbiol. 60:470
Ref.: 20215 Genus Paenibacillus
Ref.: 20215 Taxonomical status gen. nov. (VL)
Ref.: 20215 Literature reference Int. J. Syst. Bacteriol. 44:852
 Paenibacillus abyssi

Ref.: 20215 Species Paenibacillus abyssi

Ref.: 20215 Taxonomical status sp. nov. (VL)
Ref.: 20215 Literature reference Int. J. Syst. Evol. Microbiol. 65:742
Ref.: 20215 Full Scientific Name Paenibacillus abyssi Huang et al. 2015

Culture and growth conditions

Ref.: 21717 Culture medium BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514), 28C
Ref.: 21717 Culture medium growth yes
Ref.: 21717 Culture medium link https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514
.pdf
Ref.: 21717 Culture medium Bacto peptone 5.00 g Bacto yeast extract 1.00 g Fe(III) citrate 0.10 g
composition NaCl 19.45 g MgCl2 (dried) 5.90 g Na2SO4 3.24 g CaCl2 1.80 g KCl
0.55 g Na2CO3 0.16 g KBr 0.08 g SrCl2 34.00 mg H3BO3 22.00 mg
Na-silicate 4.00 mg NaF 2.40 mg (NH4)NO3 1.60 mg Na2HPO4 8.00
mg Distilled water 1000.00 mlFinal pH should be 7.6 0.2 at 25C. If
using the complete medium from Difco add 37.4 g to 1 litre water.

Temperatures Kind of temperature Temperature

Ref.: 21717 optimum 28 C

Ref.: 21717 Temperature range mesophilic

Isolation, sampling and environmental information

Ref.: 21717 Sample type/isolated abyssal sediment

from
Ref.: 21717 Geographic location (10.0575N; 82.985E) at a depth of 3636 m
(country and/or sea,
region)
Ref.: 21717 Geographic location 10.0575/82.985

Molecular biology

Ref.: 21717 GC-content 45.5 mol% high pressure liquid chromatography (HPLC)

Sequence Sequence accession Sequence Sequence Associated

database description accession number length(bp) NCBI tax ID
Ref.: 21717 GenBank Direct Paenibacillus abyssi strain KC978082 1453 1340531
submission SCSIO N0306 16S ribosomal
RNA gene, partial sequence
 Paenibacillus abyssi

Strain availability

Ref.: 21717 Culture collection no. DSM 26238, CGMCC 1.12987

Ref.: 21717 Strain history <- X.-P. Tian, South China Sea Institute of Oceanology, Chinese
Academy of Sciences, Guangzhou, China; SCSIO N0306 <- X.-P.
Tian and X.-F. Huang

References

Ref.: 20215 D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all
names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1.
Jan. 1980, and validly published nomenclatural changes since.
Ref.: 21717 Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH;
Curators of the DSMZ; DSM 26238
* These References are textmined
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