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  • Dataset S1. Enterococcus Faecium Metadata

    Diunggah oleh

    Kelvin Leong
    7 tayangan6 halaman
    This document contains metadata on Enterococcus faecium strains collected in Melbourne, Australia and Darwin, Australia between 1998-2009. It includes the strain ID, year and location of collection, and genotype (presence of vanB gene which confers vancomycin resistance). There are a total of 63 unique strains listed.

    Deskripsi Asli:

    Mbo 004131589 Sd 1

    Judul Asli

    Mbo 004131589 Sd 1

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    This document contains metadata on Enterococcus faecium strains collected in Melbourne, Australia and Darwin, Australia between 1998-2009. It includes the strain ID, year and location of collection, and genotype (presence of vanB gene which confers vancomycin resistance). There are a total of 63 unique strains listed.

    Hak Cipta:

    © All Rights Reserved
    Unduh sebagai XLS, PDF, TXT atau baca online dari Scribd
    Tandai sebagai konten tidak pantas
    7 tayangan6 halaman

    Dataset S1. Enterococcus Faecium Metadata

    Diunggah oleh

    Kelvin Leong
    This document contains metadata on Enterococcus faecium strains collected in Melbourne, Australia and Darwin, Australia between 1998-2009. It includes the strain ID, year and location of collection, and genotype (presence of vanB gene which confers vancomycin resistance). There are a total of 63 unique strains listed.

    Hak Cipta:

    © All Rights Reserved
    Unduh sebagai XLS, PDF, TXT atau baca online dari Scribd
    Tandai sebagai konten tidak pantas
    dari 6

    Dataset S1. Enterococcus faecium metadata.

    Strain ID number Specimen year Date City Country Hospital Genotype


    AUS 0002 1998 29-May-1998 Melbourne Australia Austin nil
    AUS 0004 1998 21-Oct-1998 Melbourne Australia Austin vanB
    AUS 0006 1999 19-Jul-1999 Melbourne Australia Austin nil
    AUS 0007 1999 8-Sep-1999 Melbourne Australia Austin nil
    AUS 0010 2000 25-Mar-2000 Melbourne Australia Austin nil
    AUS 0012 2000 5-Sep-2000 Melbourne Australia Austin vanB
    AUS 0015 2002 9-Dec-2002 Melbourne Australia Austin nil
    AUS 0016 2003 22-May-2003 Melbourne Australia Austin vanB
    AUS 0018 2003 27-Jun-2003 Melbourne Australia Austin nil
    AUS 0019 2004 13-Feb-2004 Melbourne Australia Austin nil
    AUS 0021 2004 26-Aug-2004 Melbourne Australia Austin vanB
    AUS 0029 2005 11-Nov-2005 Melbourne Australia Austin nil
    AUS 0030 2005 29-Nov-2005 Melbourne Australia Austin vanB
    AUS 0031 2005 3-Dec-2005 Melbourne Australia Austin vanB
    AUS 0038 2006 5-May-2006 Melbourne Australia Austin nil
    AUS 0039 2006 19-Sep-2006 Melbourne Australia Austin nil
    AUS 0040 2006 17-Oct-2006 Melbourne Australia Austin nil
    AUS 0041 2006 14-Nov-2006 Melbourne Australia Austin nil
    AUS 0045 2007 11-Mar-2007 Melbourne Australia Austin vanB
    AUS 0048 2007 9-Apr-2007 Melbourne Australia Austin vanB
    AUS 0050 2007 22-Apr-2007 Melbourne Australia Austin vanB
    AUS 0051 2007 4-May-2007 Melbourne Australia Austin vanB
    AUS 0053 2007 19-Jun-2007 Melbourne Australia Austin nil
    AUS 0055 2007 14-Jul-2007 Melbourne Australia Austin vanB
    AUS 0056 2007 30-Sep-2007 Melbourne Australia Austin vanB
    AUS 0057 2007 1-Oct-2007 Melbourne Australia Austin nil
    AUS 0063 2008 23-Feb-2008 Melbourne Australia Austin nil
    AUS 0064 2008 15-Mar-2008 Melbourne Australia Austin nil
    AUS 0065 2008 5-Jun-2008 Melbourne Australia Austin nil
    AUS 0068 2008 16-Jun-2008 Melbourne Australia Austin vanB
    AUS 0069 2008 17-Jun-2008 Melbourne Australia Austin vanB
    AUS 0070 2008 29-Jun-2008 Melbourne Australia Austin vanB
    AUS 0071 2008 24-Jul-2008 Melbourne Australia Austin vanB
    AUS 0072 2008 29-Jul-2008 Melbourne Australia Austin vanB
    AUS 0073 2008 18-Aug-2008 Melbourne Australia Austin vanB
    AUS 0075 2008 8-Sep-2008 Melbourne Australia Austin vanB
    AUS 0077 2008 20-Oct-2008 Melbourne Australia Austin vanB
    AUS 0078 2008 8-Nov-2008 Melbourne Australia Austin nil
    AUS 0080 2008 26-Dec-2008 Melbourne Australia Austin nil
    AUS 0081 2009 10-Feb-2009 Melbourne Australia Austin vanB
    AUS 0084 2009 21-Feb-2009 Melbourne Australia Austin vanB
    AUS 0085 2009 22-Feb-2009 Melbourne Australia Austin vanB
    AUS 0086 2009 24-Feb-2009 Melbourne Australia Austin vanB
    AUS 0087 2009 26-Feb-2009 Melbourne Australia Austin vanB
    AUS 0088 2009 8-Mar-2009 Melbourne Australia Austin vanB
    AUS 0090 2009 23-Mar-2009 Melbourne Australia Austin vanB
    AUS 0091 2009 26-Mar-2009 Melbourne Australia Austin vanB
    AUS 0092 1999 25-Jun-1999 Melbourne Australia Austin nil
    AUS 0093 2009 10-May-2009 Melbourne Australia Austin vanB
    AUS 0094 2009 13-May-2009 Melbourne Australia Austin nil
    AUS 0095 2009 8-May-2009 Melbourne Australia Austin vanB
    AUS 0096 2009 5-May-2009 Melbourne Australia Austin vanB
    AUS 0098 2003 14-Nov-2003 Melbourne Australia Austin nil
    AUS 0100 2000 2-Dec-2000 Melbourne Australia Austin nil
    AUS 0101 2000 2-Nov-2000 Melbourne Australia Austin nil
    AUS
    RPH10149
    (AUS 2009 15-Nov-2009 Melbourne Australia Austin vanB
    0128)
    RPH2 (AUS 2010 4-Jan-2009 Perth Australia Royal Perth vanB
    0129)
    RPH3 (AUS 2010 5-May-2009 Perth Australia Royal Perth vanB
    0130) 2010 13-Sep-2009 Perth Australia Royal Perth vanB
    Ef_928 2009 22-Jul-2009 Darwin Australia Royal Darwin nil
    Ef_755 2009 15-Sep-2009 Darwin Australia Royal Darwin vanB
    Ef_1_231_502 Broad collection
    Ef_DO (TX16) 1992 Houston USA

    n=63
    Phenotype ST Source Seq platform Read type Read length No. of reads
    VSE 202 Blood culture Illumina paired 100 18559693
    VRE 17 Blood culture 454 mate pair ~400 120556
    VSE 17 Blood culture Illumina paired 100 14785806
    VSE 17 Blood culture Illumina paired 100 21420072
    VSE 32 Blood culture Illumina paired 100 14633937
    VRE 17 Blood culture Illumina paired 100 19430296
    VSE 17 Blood culture Illumina paired 100 17981326
    VRE 18 Blood culture Illumina paired 100 18274393
    VSE 252 Blood culture Illumina paired 100 19540713
    VSE 17 Blood culture Illumina paired 100 18908592
    VRE 17 Blood culture Illumina paired 100 17123154
    VSE 203 Blood culture Illumina paired 100 15659177
    VRE 252 Blood culture Illumina paired 100 11771941
    VRE 252 Blood culture Illumina paired 100 15145149
    VSE 252 Blood culture Illumina paired 100 13765896
    VSE 204 Blood culture Illumina paired 100 15127375
    VSE 203 Blood culture Illumina paired 100 15183377
    VSE 203 Blood culture Illumina paired 100 12823274
    VRE 203 Blood culture Illumina paired 100 13523505
    VRE 203 Blood culture Illumina paired 100 15339247
    VRE 252 Blood culture Illumina paired 100 9438551
    VRE 203 Blood culture IonTorrent single ~200 1469373
    VSE 203 Blood culture Illumina paired 100 17258309
    VRE 203 Blood culture Illumina paired 100 14331396
    VRE 252 Blood culture IonTorrent single ~100 2357127
    VSE 252 Blood culture Illumina paired 100 15394250
    VSE 132 Blood culture Illumina paired 100 13251039
    VSE 252 Blood culture Illumina paired 100 13683076
    VSE 341 Blood culture Illumina paired 100 11196913
    VRE 203 Blood culture IonTorrent single ~200 1242960
    VRE 414 Blood culture Illumina paired 100 13123973
    VRE 203 Blood culture Illumina paired 100 14792541
    VRE 252 Blood culture Illumina paired 100 13834851
    VRE 203 Blood culture IonTorrent single ~100 3051515
    VRE 203 Blood culture IonTorrent single ~100 2363466
    VRE 203 Blood culture IonTorrent single ~100 1261900
    VRE 203 Blood culture IonTorrent single ~200 1391540
    VSE 203 Blood culture Illumina paired 100 8974674
    VSE 17 Blood culture Illumina paired 100 11495276
    VRE 483 Blood culture Illumina paired 100 8694271
    VRE 17 Blood culture Illumina paired 100 14841718
    VRE 203 Blood culture 454 single ~400 99859
    VRE 203 Blood culture IonTorrent single ~100 1312423
    VRE 203 Blood culture Illumina paired 100 23079203
    VRE 203 Blood culture IonTorrent single ~200 1279881
    VRE 203 Blood culture Illumina paired 100 16782698
    VRE 203 Blood culture Illumina paired 100 11216559
    VSE 55 Blood culture Illumina paired 100 17844595
    VRE 203 Blood culture IonTorrent single ~100 2737172
    VSE 17 Blood culture Illumina paired 100 6078022
    VRE 203 Blood culture IonTorrent single ~100 987316
    VRE 203 Blood culture IonTorrent single ~100 3171266
    VSE 17 Blood culture Illumina paired 100 5295489
    VSE 17 Blood culture Illumina paired 100 13946198
    VSE 22 Blood culture Illumina paired 100 18118336
    VRE 203 Blood culture IonTorrent single ~100 1554032
    VRE 341 Faeces/rectal swab Illumina paired 100 14812823
    VRE 203 Faeces/rectal swab Illumina paired 100 12602057
    VRE 203 Faeces/rectal swab Illumina paired 100 14812823
    VSE 203 Blood culture IonTorrent single ~100 1390633
    VRE 203 Wound swab IonTorrent single ~100 1467859
    203 Blood culture n/a n/a n/a n/a
    18 Blood culture n/a n/a n/a n/a
    Total Yield (Mb) Seq Depth
    3712 1229x
    49 16x
    296 98x
    4284 1419x
    2926 969x
    3886 1287x
    3598 1191x
    3655 1210x
    3908 1294x
    3782 1252x
    3425 1134x
    3132 1037x
    2354 780x
    3029 1003x
    2753 912x
    3025 1002x
    3037 1006x
    2564 849x
    2705 896x
    3068 1016x
    1888 625x
    275 91x
    3452 1143x
    2866 949x
    211 70x
    3079 1020x
    2650 878x
    2735 906x
    2240 742x
    249 82x
    2625 869x
    2959 980x
    2767 916x
    306 101x
    242 80x
    124 41x
    272 90x
    1795 594x
    2299 761x
    1739 576x
    2962 981x
    40 13x
    114 38x
    4615 1528x
    251 83x
    3357 1112x
    2243 743x
    3569 1182x
    293 97x
    608 201x
    101 33x
    265 88x
    1059 351x
    2789 924x
    3624 1200x
    152 50x
    2962 981x
    2520 834x
    2963 981x
    185 61x
    197 65x
    n/a n/a
    n/a n/a

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