NAME MORPHOLOGY & CULTURE AND VIRULENCE PATHOGENESIS EPIDEMIOLOGY LAB DIAGNOSIS TREATMENT &
IDENTIFICATION GROWTH FACTORS ANTIBODY
SENSITIVITY
Escheria Coli Gram negative MACCONKEY: - Flagellar (H), Most common bacterial Stool Lactose fermenting with Rehydration - IV
rod/bacilli Lactose fermenting Capsular, (K/V) and cause of UTIs Urine acid and gas Triple
Pink colonies Somatic (O) antigen CSF Sugar Iron Agar test Extended spectrum
Slugglishly mobile Smooth colonies O antigen used in Traveller’s diarrhea slant turns YELLOW beta lactamase
serotyping
- LPS, O, Ag Hemolytic Uremic POSITIVE Indole test Amoxcillin
- ST (heat labile), LT Syndrome Ampicillin
(heat stable)
- Pili I, II, III Incubation period 1-2 Ciprofloxacin
- Verocytotoxin days
- Shiga toxin TPM-SMZ
BLOOD AGAR:
Large white colonies Voges Proskauer is
NEGATIVE 24hr
incubation, adding alpha
napthol and postassium
hydroxide remains
YELLOW
Haemagglutination for
pili
CYTOSINE-LACTOSE
ELECTROLYTE Citrate negative
DEFICIENT:
Lactose fermenting Passive latex
Yellow colonies agglutination
CLED:
Lactose fermenting
Yellow
Mucoid colonies
Proteus spp. Gram negative MACCONKEY: O and S antigens Methyl Red POSITIVE Penicillin
rods/bacilli NOT Lactose fermenting mirabilis
- Mirabilis NOT pink UREASE activity Urease POSITIVE
- Vulgaris Actively MOTILE Mirabilis causes urine to Urea agar test Amoxcillin
smell like ammonia Ampicillin
Toxic to kidney
Cephalosporins
Alkaline pH aids
struvite and apatite Aminoglycosides - -
stone formation mycin
Tetracyclines
BLOOD AGAR:
Single colony
Triple Sugar Iron Agar
Swarming
yellow with H2S
blackening
Maltose utilization
Mirabilis – NEGATIVE
Vulgaris – POSITIVE
Lactose fermentation
negative
CLED: Indole negative
NOT Lactose fermenting
Translucent blue colonies WEIL FELIX
AGGLUTINATION
Psuedomona Gram negative rod/ MACCONKEY: Exotoxin A – stops OXIDASE POSITIVE ES Penicillin
s aeruginosa bacilli NON lactose fermenting protein synthesis via
NOT pink elongation protein 2; via Aminoglycosides
ADP ribosylisation
Capsule
Endotoxin
S – Sepsis; erythema
gangreosum, necrotic
skin lesions
U – UTI in Foley
catheters
Staphlococcu Gram POSITIVE cocci BLOOD AGAR: UTI cystitis Skin and preurethral CATALASE POSITIVE Polymyxin B
s in clusters White tract
saprophyticu NON haemolytic Septicaemia COAGULASE negative Vancomycil
s GI tract no clotting
Endocarditis – after surgery
Cystitis
MUELLER HILTON
White colonies Novobiocin
Novobiocin resistance RESISTANT
Bacitran RESISTANT
POLYMYXIN B
SENSITIVE
CUT No mannitol
reduction
No phosphate reduction
Staphlococcu
s epidermidis
Enterococcus Gram positive cocci in MACCONKEY: Pbp5 and is usually Nosocomial infections CATALASE negative From highest
faecalis pairs or short chains resistant to penicillins potency:
Purple SALT TOLERANT 1)Ampicillin
BLOOD AGAR: 6.5% NaCl 2)Penicillin-G
Off-white 3)Carbapenems
Haemolytic/non- Hydrolizes aesculin
haemolytic colonies
ALPHA Pyrrolidonyl
HAEMOLYTIC Arylmidase POSITIVE
incubated at 35
degrees for 4 hours
Leucine Amino
Peptidase positive
hydrolysis turns colony
red after adding
cinnamaldehyde
PAP positive
LAP positive
GENITAL TRACT INFECTIONS
NAME MORPHOLOGY & CULTURE AND VIRULENCE PATHOGENESIS EPIDEMIOLOGY LAB DIAGNOSIS TREATMENT &
IDENTIFICATION GROWTH FACTORS ANTIBODY
SENSITIVITY
High Vaginal Bacterial vaginosis
Swab Normal
Trichomonas - Squamous epithelial
cells
- Lactobacilli
- Strep agalactae
Abnormal
- Clue cells
Neisseria Gram negative CHOCOLATE AGAR: Fimbriae/pili Urethritis OXIDASE POSITIVE BETA LACTAMASE
gonorrhoeae diplococci Clear moist colonies Multiple discharge through PRODUCING
Intracellular diplococci Capnophilic Capsule sinuses
in polymorphs Epididymitis - Ceftriaxone
MODIFIED THEYER Asymptomatic carriage - Cephrofloxacin
NONmotile MARTIN – enriched acts as reservoir Cervicitis - Ofloxacin +
INTRAcellular media with lysed blood Vaginitis CATALASE POSITIVE Doxycycline
Fimbriae/pili on Colistin – resists gram Tuboovarian abscess Capnophilic - Erythromycin
surface negative Pelvic inflammatory Carbohydrate utilization - Azithromycin
Trimethoprim – disease pattern
resists proteus
Neonate: Glucose positive with
Gonococcal opthalmia acid production yellow
Non-venereal
Candida Large, oval, single, SABOURAND’S AGAR GERM TUBE test Buconazole
albicans budding yeast cells POSITIVE for C.
Stains purple albicans outgrowth of
spores produced during
Psuedohyphae germination
Germ tubes
BLOOD AGAR:
Off-white colonies
Gardnerella Gram negative Abnormal discharge CLUE CELLS on Metronidazole
vaginalis coccobacillus Gray and thin vaginal SALINE WET MOUNT
discharge Clindamycin
pH – litmus paper;
pH meter [Vaganosis 5-6;
Candidiasis <4.5; acidic
T. Vaginalis 5-7 alkaline
Trichomonas Oval, fusiform Abnormal discharge Malodourous on Saline Metronidazole
vaginalis flagellated protozoa Greenish malodorous Wet Mount jerky
discharge motility visible
Jerky motility
Strawberry cervix
Erythema
LACTASE POSITIVE
Gram positive
Catalase negative
Lactic positive – ferments
glucose to lactic acid
α-hemolytic
Staphlococcus Gram positive cocci in BLOOD AGAR: Haemolysins
aureus clusters White/ golden CATALASE POSITIVE
BETA-haemolytic Coagulase
Hyaluronidase COAGULASE
POSITIVE
DNAase
Lipase
Protein A
MacConkey agar –
small and pink; lactose Enterotoxin
formation
Toxic Shock Toxin - 1 CAMP Test:
-Blood tellurite- black; Replaced by clostridium
potassium tellurite to perfringens in reverse
tellurium camp test
Haemophilius Small gram BLOOD AGAR: Polysaccharide capsule 6mo-6yrs most likely Needs Factor X and V to Chloramphenicol
influenzae NEGATIVE Shows satellitism with infected; grow
pleomorphic rods or Staph aureus Endotoxins Cephalosporins
bacilli hemi-opaque, peak incidence: influenzae-both X and V
Coccobacilli grey white, Type b polysaccharide 6mo-1yr parainfluenzae-only V Sulfonamides
mucoid colonies (PRP) aphrophilus – only X Floroquinolones –
floxacins not if
IgA protease Lancefield grouping pregnant
Capsular serotyping:
Adherence -Capsular antigen (PRP)
Colonisation can be detected
Invasion -Slide agglutination
NONmotile -Flourescent antibody
-PCR, PFGE
NON acid fast CHOCOLATE AGAR:
Both V and X present
normal growth without
satelliting
NUTRIENT AGAR:
Contains X and V
Mycobacterium Stained with Lowenstein
tuberculosis Jensen slopes
Mycobacterium
avium
intracellulare
Streptococcus Gram positive cocci in BLOOD AGAR: Hylauronic acid capsule Pharyngitis – strep throat CATALASE negative Penicillin
pyogenes PAIRS and SHORT Small, off white colonies -Impetigo
CHAINS BETA haemolytic\ Adhesins M protein, -Pneumonia BACITRAN Clindamycin
liptocheic acid -Necrotizing fascilitis – SENSITIVE
flesh eating bacteria (with inhibited by bacitran Vaccine only available
Streptokinase staph aureus) plate in animals M protein
Corynebacteriu Gram POSITIVE BLOOD TELLURITE: INCUBATION URTI Toxemia, Upper Nose, throat, Throat swab/ lesion swab Antibodies to fragment
m diptheriae/ bacilli 48 hrs PERIOD: 3-4 days respiratory tract infection nasopharynx and skin B for protective effect
NON motile Gray/ black colonies of carriers/patients GRAM STAIN Gram
Klebs Koeffler Irregularly stained Exotoxin/ Diptheria Faucial commonest type POSITIVE bacilli 1st line
Bacillus segments MACCONKEY AGAR toxin A + B Nasal carriers keep Antimicrobial drugs
Club shaped swellings - Powerful Largyngeal infection for longer “Chinese letter” pattern Erythromycin
with lighter stained LOEFFLER’S SERUM - Produced by all Nasal Procaine Penicillin
Dipherioids: tails SLOPE virulent strains Conjunctival Spread by DROPLETS SCHICK test Toxin IM for 14 days
- Hofmanii polar bodies - Rapid growth Genital asymptomatic injected intradermally into Rifampcin
- Xerosis metachromatic - 6-8 hours incubation Toxoided: Cutaneous 2ndary carriers one arm and inactivated Clindamycin
- Psuedodiph granules - Small circular white - Prolonged storage toxin into the other arm 20k – 100k units of
theriticum Volutin/Babes-Ernst creamy colonies - Incubation at 37 1) Virulent bacilli lodge Positive – susceptibility antitoxin
granules of degrees for 4-6 in throat to diptheria Active immunization
polymetaphosphate HOYLE’S MEDIA weeks 2) Multiply in superficial - Formol toxoid –
- Treatment with 0.2- layers of mucous ALBERT’S STAIN incubation with
MCLEOD’S MEDIA 0.4% formalin membrane metachromatic granules
Snapping movements - Acid pH 3) Exotoxin necrosis of formalin for 3-4
Chinese letters CYSTEINE neighbouring tissue NEISSER’s and weeks
COMMON IN TELLURITE 4) Inflammatory response PONDER’s stains - Purify and
SCHOOLCHILDRE Gray black colonies to exotoxin green rod with dark standardize
N similar to staph aureus psuedomembrane purple metachromic flocculating units
fibrinous exudate granules - Adsorbed toxoid –
Leathery with disintegrated purified toxoid
pseudomembrane on epithelial cells, Grows anaerobically at 37 adsorbed onto
the pharyx fibrinous leucocytes, degrees insoluble aluminium
mesh of PMNCs, erythrocytes and phosphate or
epithelial cells, RBC bacteria HISS SERUM MEDIUM aluminium
and bacteria 5) Toxin absorption by – HSM hydroxide IM,
blood Ferments sugar in HSM DTP or TD
6) Toxemic degeneration with acid formation - DPT – triple
myocardium and vaccine with
peripheral nerves HSM - Toxigenic strain diphtheria, tetanus
ferments glucose and and pertussis
First on upper pharynx and maltose, but produces - <7yo – high dose
spreads downwards acid only - >7yo – low dose
- Tissue culture:
COMPLICATIONS - Bacteria incorporated
- Asphyxia and death into agar overlay of
- Acute circulatory cell culture
failure from toxemic Eukaryotic cell lines
degeneration Toxin diffuses into
- Postdiphtheric cells and kills them
paralysis 3rd/4th
week of disease
- Sepsis pneumonia
- Adrenal and liver
degeneration
Bordetella Encapsulated CHARCOAL BLOOD Incubation period 2wks Causes whooping cough: OBLIGATE AEROBIC Infants Azithromycin
pertussis coccobacilli AGAR mercury drops Catarrhal stage: Mild
Pili of cell wall URT infection:1-2wks CATALASE POSITIVE Erythromycin – 14 days
Gram NEGATIVE Filamentous Paroxysmal: LRT OXIDASE POSITIVE
haemagglutinin infection: severe cough; 1- Children >1mo
6 wks Nasopharyngeal swabs in Clarithromycin
Pertussis toxin Covalescent: Less severe paroxysmal stage
cough. 6wks-3m Childrem >6mo
Adenyl cyclase toxin SEROLOGICAL TEST: TMP-SMZ
Does not invade deeper Positive IgA
Culture: Tracheal cytotoxin tissue antibodies found against
BORDET GENGOU whole cell B. pertussis
medium Dermonecrotic toxin
REGAN LOWE medium Paroxysmal cough
GASTROINTESTINAL INFECTIONS
NAME MORPHOLOGY & CULTURE AND VIRULENCE PATHOGENESIS EPIDEMIOLOGY LAB DIAGNOSIS TREATMENT &
IDENTIFICATION GROWTH FACTORS ANTIBODY
SENSITIVITY
Vibrio cholerae Gram NEGATIVE Cary Blair transport Choleragen damages small Fresh or salt water BILE SALTS agar Tetracycline
medium intestine epithelial layer
Comma shaped imbalance in electrolytes CARY-BLAIR transport
DARTING motility medium
hanging drop prep THIOSULPHATE
CITRATE BILE OXIDASE POSITIVE
Psuedomembrane SALTS AGAR
HEIBERG
FERMENTATION
ALKALINE PEPTONE
WATER
Salmonella Gram NEGATIVE XYLINE LYSINE Incubation period 3- TYPHOID FEVER: TRIPLE SUGAR IRON Chloramphenicol
spp. rods/bacilli DEOXYCHOLATE 21 days Bloody diarrhea AGAR test BLACK
- typhi AGAR Red colonies Rose spots and red due to production Ciprofloxacin
with black centers Patients can harbor of H2S and gas
negative for Shigella pathogens for 1 wk- several Ampicillin
months
If resistant TMP-
ACUTE SMZ do not use in
ENTEROCOLITIS: enterocolitis
- typhi, heidelburg,
agona, Newport Biliary carriers
- 8hrs – 3days Cholecystectomy
- Headache, low grade
fever, diarrhea, nausea,
MACCONKEY AGAR: vomiting KAUFFMANN’s
NOT pink White classification
non-lactose fermenting
Agglutination test with
absorbed sera 1800
serotypes
- Paratyphi – A
- Typhimurium – B
- Choleraesius – C1
- Typhi - D
MACCONKEY:
NOT pink
non-lactose fermenting
Camplylobacte “Seagull” curved SKIRROW AGAR at 42 LT toxin, similar to E. Invades mucosa and Unpasterurized milk OXIDASE POSITIVE Self limiting with
r spp. shaped gram degrees Coli spreads systematically gastroenteritis
NEGATIVE rods Poultry, cattle, humans Nadilixic acid sensitivity
supposed to be LYSED BLOOD AGAR: Gastroenteritis Penicillin
spirals with growth inhibitors 5-
7% CO2 and N Guillan-Barre Erythromycin
EXTRAcellular
MOTILE Incubated at 42 degrees Reactive arthritis Fluoroquinolones
MICROAEROPHILI translucent, moist
C colonies
FASTIDIOUS
Incubated at 37 degrees
Ascaris “Round worm” 1) PINWORM Faeces used as Circular shaped egg on Mebendazole
lumbricoides 2) ROUNDWORM fertilizer wet prep Albendazole
3) WHIPWHORM
Survives extremes in
Ingested orally temperature
Larvae hatch in small
intestine
Spread via portal
circulation
Infects lung capillaries,
causes granulomas,
nutritional impairment and
obstruction
Eggs passed out in stool
Causes pneumonitis
Acyclostoma
duodenale
Enterobius
vernicularis
Giardia lamblia Most common intestinal Upper GIT Trichome and iron Metronidazole
flagellate and most haematoxylin stain on
common waterborne Uncooked, stool sample Quinacrine
disease in humans contaminated
vegetables Tinidazole
Streptococcus Gram POSITIVE cocci BLOOD AGAR: Dextrans adherence OPTOCHIN resistant
viridans in PAIRS and Green tinged to fibrin platelets
CHAINS ALPHA haemolytic BILE SOLUBILITY
colonies negative
Fermentation of bile:
negative (insoluble)
Listeria Small short GRAM BLOOD AGAR: CATALASE POSITIVE
monocytogenes POSITIVE -->BETA
HAEMOLYTIC TUMBLING motility at
TUMBLING motility COLONIES 18-22 degrees
Penicillum
Lactophenol cotton
blue:
Histoplasma Bird and bat droppings Ketonodazole
capsulatum
Moist soil Amphotericin B
Paracoccoides Self limiting
brasiliensis