CONTENTS – PART - I
1. Introduction
6. Immunological Methods
1. PCR Detection
3. Microbial Fingerprinting
2. Flow Cytometry
INTRODUCTION:
The term antibiotic came from the word antibiosis coined in 1889 by Louis Pasteur's
pupil Paul Vuillemin which means a process by which life could be used to destroy
life.
Defined as chemical substances produced by various species of microbes such as
bacteria & fungi, in low concentrations destroy or inhibit the growth of other species
of microbes.
Anti = against
Bios = life
Miracle Cure?
Miracle Cure?
When the good bacteria gone there is more room for bad microbes to invade!
Classification of Bacteria
Morphological classification
1. TRUE BACTERIA Cocci – These are spherical or oval cells. On the basis of
arrangement of individual organisms they can be described as
Diplobacilli
Streptobacilli
Palisades
Chinese-letter form
Coccobacilli
Comma-shaped
These are rigid organisms like true bacteria but they resemble fungi in that they
exhibit branching and tend to form filaments.
They are termed such because of their resemblance to sun rays when seen in tissue
sections.
3. Spirochaetes
4. Mycoplasmas
These bacteria lack in rigid cell wall (cell wall lacking) and are highly pleomorphic
and of indefinite shape.
Capsule
Flagella
Flagellate –
Monotrichous
Lophotrichous
Amphitrichous
Peritrichous
GRAM’S STAIN
Utilization of carbohydrates
Oxidative - Micrococcus
Growth rate
Pigment production
Based on Nutrition
• Autotrophs
• Heterotrophs
Temperature
Oxygen dependence
pH
Salt concentration
Atmospheric pressure
Temperature
Oxygen dependence
• Aerobe (grow in ambient temperature, which contains 21% O2 and a small amount of
CO2, 0.03%)
• Microaerophilic (grow under reduced O2, 5-10% and increased CO2, 8-10%)-
Campylobacter jejuni, Helicobacter pylori
Oxygen dependence
H. influenzae,
N. gonorrhoeae
Aerotolerant
ph
Alkaliphiles (Vibrio)
Majority of the medically important bacteria grow best at neutral or slightly alkaline reaction
(pH 7.2-7.6)
Bacterial Cell
Cell envelope
Outer
Capsule
Teichoic acid
Cell wall
Peptidoglycan
Rigidity
Cell membrane
CYTOPLASM
Nucleiod
Chromosomal DNA
Plasmids
Inclusion bodies
Much granule
Spores
Capsule
Polysaccharide
Antiphagocytic
antigenic
Virulence
Pili
antigenic
Pili
Pili are hair-like projections of the cell , They are known to be receptors for certain
bacterial viruses. Chemical nature is pilin
b. Sex pili: longer and coarser, only 1-4, related to bacterial conjugation
Flagella
Monotrichate/Amphitrichate/Lophotrichate/Peritrichate
Plasmid
Nucleus
Endospores
Resistant structure
Endospores (spores)
Spores
Spores can also survive very high or low temperatures and high UV radiation for
extended periods. This makes them difficult to kill during sterilization.
Bacillus species including anthracis (anthrax) and cereus (endotoxin causes ~5% of
food poisoning)
‘Real Time’ quantitative PCR: fluorescence signal corresponds with the amount of
application product
Closed-tube chemistries
No electrophoresis
No post-PCR processing
Fingerprinting techniques:
Observation: microscopy
CONTENTS – PART - II
1. Antibiotics - History
3. Importance of Antibiotics
4. Classification of antibiotics
• MOA
• Adverse Effects
7. Antibiotic Resistance
ANTIBIOTICS
• ~ recent year: modifying old drugs, finding new discipline in antibacterial combats.
IMPORTANCE OF ANTIBIOTICS:
The elimination of the global crisis of infectious diseases (cholera, plague, dysentery).
Over the past 20 years there were 20 new infectious diseases (Legionnaires' disease,
hairycell leukemia, hemorrhagic fever and others).
In breadth of application group of antibiotics ranked the first place in the world.
Antibiotics could be
high selectivity
lack of toxicity
• Polimyxins, gramicidin C
• Fuzidin
• Antifungal
• Broad-spectrum:
• Chloramphenicol
Bacterial cell
2. Superinfection;
3. Dysbiosis;
4. Allergic reactions;
3. To determine the optimal antibiotic dose and route of administration based on the its
pharmacokinetic and the concomitant disease. The concentration of antibiotic in the
blood should be 3-4 times bigger in comparison with minimum inhibitory
concentration for the selected pathogen.
Classification of penicillins
1.Natural penicillins:
a) Short acting:
Penicillin-G
Penicillin-sodium
Penicillin-potassium
Penicillin V
b) Long acting:
Penicillin G. procaine
Bicillin-3,-5
Classification of penicillins
2. Semisynthetic penicillins:
I. Penicillinase resistant
Oxacillin
Dicloxacillin
Cloxacillin
Methicillin
Classification of penicillins
III. Carboxypenicillins
Carbenicillin
Ticarcillin
IV. Ureidopenicillins
Azlocillin
Piperacillin
V. Combined penicillins
Unazin
Ampiox (Ampicillin+Oxacillin)
Augmentin (Amoxycillin+Clavulanic acid)
Magnapen (Ampicillin+Flucloxacillin)
• staphylococci,
• bacillus anthracis,
• clostridium perfringens,
• Neisseria gonorrhoeae,
• Neisseria meningitis,
• Leptotrichia buccalis,
• Treponema pallidum,
• Treponema partenue.
• Endocarditis
• Pericarditis
• Meningitis
• Pneumonia
• Gonorrhea
• Anthrax,
• Botulism,
• Gas gangrene,
• Tetanus,
• Empyema,
• Rheumatic fever,
• Listeriosis.
Penicillin G (benzyl penicillin) is one of the least toxic antibiotics. It does not cause
any direct toxicity. Only in very high doses, especially injected IV, it can cause
neurotoxic effect and bleeding.
I. Penicillinase resistant:
Semisynthetic penicillins
a) Aminopenicillins
The aminopenicillins have identical spectrum and activity, but amoxicillin is better absorbed
orally (70–90%).
Adverse effects
Resistance
5 generations of CEPHALOSPORINS
3. THIRD GENERATION
They have enhanced activity against gram-negative bacilli, including most enteric organisms
and Serratia marcescens. Ceftriaxone and cefatoxime have become agents of choice in the
treatment of meningitis.
Ceftazidime has activity against Pseudomonas aeruginosa.
V.Ceftriaxone
VI.Cefixime
VII.Cefoperazone
VIII.Ceftazidime
IX.Cefatoxime
4-th generation
X. Cefepim
XI.Cefpirom
5-th generation
XII.Ceftobiprole
XIII. Ceftaroline
CEPHALOSPORINS
Spectrum: WIDE
INDICATIONS
• infectious diseases of the respiratory, urinary and biliary tract, abdominal cavity, skin,
bones, joints, heart,
✓ Wide spectrum.
✓ Low toxicity.
• Cramps,
• Weakness,
• Tremor,
• Encephalopathy,
• Hypotension,
• Nausea, vomiting,
• Superinfection,
• Pseudomembranous colitis,
• Phlebitis,
• Thrombocytosis,
• Eosinophilia.
1. Spectrum of coverage
2. Patterns of resistance
4. Achievable serum, tissue, or body fluid concentration (e.g. cerebrospinal fluid, urine)
5. Allergy
6. Toxicity
9. Cost
Narrow spectrum
Less expensive
Broad spectrum
Multiple drugs
More expensive
Negative cultures
Provider Beliefs
Negative cultures
Provider Beliefs
• Immunocompromised
• Hospitalized
• Invasive devices
Mechanisms of Resistance
β-lactamases
Proportion of isolates resistant to three antibiotic classes ranged from 10 to 60% for
different gram-negative bacteria, while some are resistant to four antibiotic classes
• Significant issue for many military personnel due to the high amount of
Acinetobacter in the desert
Healthcare-associated
Risk factors
• Recent surgery
• Renal dialysis
Community-associated
Do not have usual risk factors associated with HA-MRSA
• Prisoners
• Military personnel
• Aboriginals
• The homeless
IMPACT guideline
• Vancomycin
• Ceftazidime
• Imipenem/meropenem/ertapenem
IMPACT guideline
1. Broad-spectrum antibiotics
• Data collection form completed and faxed with MAR on first order of big gun
Sanford Guide
IMPACT
• With commonly prescribed empirical therapy and useful local resistance
information
Local antibiogram
ANTIMICROBIAL STEWARDSHIP
1. Preventing infections
5. Development of new antibiotics and new diagnostic tests for resistance bacteria
• Re-evaluate, de-escalate or stop therapy with transitions of care (e.g. ICU to step-
down or ward)
• Make sure that all prescriptions/orders for antibiotics have the appropriate dose,
duration, and indication
• Prevent infection
Remove catheters
Conclusion
Adverse reactions
Make sure an indication, dose, and expected duration are part of the
prescription order
Justified use of antimicrobials not only treats infections, but also improves patient
outcomes and reduces the risk of development of bacterial resistance
REFERENCES
• Brunton LL, Chabner BA, Knollman BC, editors. Goodman & Gilman’s the
pharmacological basis of therapeutics. 12th ed. New York: McGraw-Hill; 2011.
• Smith RD, Coast J. Antimicrobial resistance: a global response. Bull World Health
Organ. 2002;80(2):126-33.
• Hong W, Zeng J, Xie J. Antibiotic drugs targeting bacterial RNAs. Acta
Pharmaceutica Sinica B. 2014;4(4):258-265.
• http://www.hku.hk/hkucoi/impact.pdf
• http://ha.home/ho/ps/impact.pdf
• http://www.chp.gov.hk/files/pdf/reducing_bacterial_resistance_with_impact.pdf
• Roberts, E., Sethi, A., Montoya, J., Woese, C. R. & Luthey-Schulten, Z. Molecular
signatures of ribosomal evolution. Proc. Natl Acad. Sci. USA 105, 13953–13958
(2008).