README

Gingerich, S.B., Voss, C.I, and Johnson, A.D.
, 2017, Seawater-flooding events and

impact on freshwater
lenses of low-lying islands: controlling factors, basic management and mitigation
https://dx.doi.org/10.1016/j.jhydrol.2017.03.001
02/14/2017 Model archive created
---------------------------------------------------------------------------------
/
Description:
-----------
The underlying directories contain all of the input and output files for
the simulations described in the paper, post-processing python scripts,
and SUTRA source code.
Descriptions of the data in each subdirectory are given to facilitate

understanding of this data release. File descriptions are provided for
select files to provide additional information that may be of use for
understanding this data release.
The model simulations were run with two versions of SUTRA

(v 2.2). Modifications were limited adding the ability to read tides
as a time-varying boundary condition and to include the use of a
water table without unsaturated flow calculations The source codes for both
versions have been included in this data release.
Users are encouraged to review the paper

(https://dx.doi.org/10.1016/j.jhydrol.2017.03.001) to understand the
purpose,
construction, and limitations of this model.
Reconstructing the data release from the online data release:

-------------------------------------------------------------
This data release is available from:
http://dx.doi.org/10.5066/F7736P3Q
The models, along with post-processing tools, will run successfully only
if the original directory structure is correctly restored. The data
release is broken into several pieces to reduce the likelihood of download
timeouts. Small files (including, readme.txt and modelgeoref.txt) are
available as
uncompressed files. All other files are zipped at the file level.
All zip files should be unzipped into a directory with the same name as the
zip file
name without the .7z extension.
The highest-level directory structure of the original data release is:
Gingerich_others_JofHyd_2017/
bin/
georef/
model/
output/
source/
webrelease/
The full directory structure of the data release and the zip files
associated
with each subdirectory are listed below. You must create this directory
structure on
your computer in order for file paths to work correctly. Otherwise, you
will need to
change the paths in the .bat and SUTRA.FIL files to the directory structure
you prefer.
System requirements:
--------------------
The models contained in this data release were run using the sutratide.exe
or sutrawt_2_2.exe executable in the bin file in this data release. The
.exe
programs were compiled using the Intel(R) Visual Fortran 64-bit compiler
for Windows.
Optional system requirements:

-----------------------------
Python 2.7 or 3.4 and Numpy and matplotlib need to be installed in order to
use the post-
processing script included in the source\PostProcessing\Python_Script
subdirectory. The python post-
processing scripts have been included for convenience and are not required
to post-process model
results. The calibration model and scenarios can be post-processed using
user-preferred
post-processing utilities.
Running the model(s):

---------------------
The simulations can be run by opening a command line/terminal in the model

directory of interest and typing:
runsutra.bat
The output from the calibration and scenario simulations are created in the
appropriate output directory. For example, calibration/verification model

results are saved to the corresponding output/ directory.
Files:
-----
readme.txt : This file documents the structure, directories and files,
and instructions on how to run the model for this data
release.
modelgeoref.txt : ASCII file with the four corners of the model domain.
bin/
SUTRA_tides/
SUTRA_WT/
This directory contains the compiled executables for the numerical
models used in the study
georef/
This directory contains one shapefile with polygons showing the active
extent of the model domain.
model/
The SUTRA model input data set is broken up into files
described below:
1. RUNSUTRA.BAT
batch file to run sutratide.exe (or sutrawt_2_2.exe)
2. SUTRA.FIL
control file for all input and output file names
3. XXX.inp
main input file for SUTRA
4. XXX.ics or XXX.rst
initial conditions of pressure and concentration
5. XXX.mmb file
In some cases this is the file used in ARGUS ONE with
SUTRAGui to generate the input files. Disclaimer: Links and other references to
non-USGS products and services are provided for information only and do not
constitute endorsement or warranty, express or implied, by the USGS, U.S.
Department of the Interior (USDOI), or U.S. Government, as to their suitability,
content, products, or services, whether they are governmental, educational, or
commercial.
SS_Calibrated/
usgs.model.reference
roi_ss.inp
roi_ss.ics
SUTRA.FIL
RUNSUTRA.BAT
roi_ss.mmb
Washover/
roi_sourcewashover_dec08.inp
roi_sourcewashover_dec08.ics
SUTRA.FIL
RUNSUTRA.BAT
Roi_sourcewashover_dec08.mmb
Recovery_calibrated/ (called managed recovery in paper)

recovery_calibrated.inp
roi_sourcewashover_dec08.rst
2009_1linewells.bcs
SUTRA.FIL
RUNSUTRA.BAT
roi_basecase.mmb
Average_stress/
average.inp
2009_average.bcs
SUTRA.FIL
RUNSUTRA.BAT
Undisturbed_recovery/
2009_nosources.inp
SUTRA.FIL
RUNSUTRA.BAT
Recovery_wout_artificial_recharge/
recovery_noart.inp
2009_noArt.bcs
SUTRA.FIL
RUNSUTRA.BAT
Recovery_wout_withdrawal/
recovery_nowithdrawal.inp
2009_NoPump.bcs
SUTRA.FIL
RUNSUTRA.BAT
Recovery_after_wetseason/
recovery_wet.inp
2009_july.bcs
SUTRA.FIL
RUNSUTRA.BAT
No_washover/
nowash.inp
roi_sourcewashover_dec08.ics
2009_1linewells.bcs
SUTRA.FIL
RUNSUTRA.BAT
No_wash_No_art/
nowash_noart.inp
roi_sourcewashover.dec08.ics
2009_noArt.bcs
SUTRA.FIL
RUNSUTRA.BAT
output/
contains SUTRA output files. The following output files were generated:
1. XXX.lst
main SUTRA output file
2. XXX.nod
ascii file of nodewise pressure, concentration, and
saturation at selected time steps
3. XXX.ele
ascii file of elementwise velocities at selected time
steps
4. XXX.smy
ascii file of iteration data for each time step
5. XXX_Timed_Obs.obs
ascii file of observation well data (note that this
filename is changed slightly from that specified in the SUTRA.FIL
6. XXX.rst
ascii file of pressure and concentration data available
for restart
7. cl_time.dat
ascii file of time and concentration data for plotting,
this is output from python script "SUTRA_node_extractor.py" which extracts from
XXX.nod file
SS_Calibrated/
roi_ss.lst
roi_ss.nod
roi_ss.ele
roi_ss.rst
roi_ss.smy
roi_ss_Timed_Obs.obs
Washover/
roi_sourcewashover_dec08.lst
roi_sourcewashover_dec08.nod
roi_sourcewashover_dec08.ele
roi_sourcewashover_dec08.smy
roi_sourcewashover_dec08_Timed_Obs.obs
cl_time.dat
Recovery_calibrated/
roi_sourcewashover_2yr.lst
roi_sourcewashover_2yr.nod
roi_sourcewashover_2yr.ele
roi_sourcewashover_2yr.rst
roi_sourcewashover_2yr.smy
roi_sourcewashover_2yr_Timed_Obs.obs
cl_time.dat
Average_stress/
cl_time.dat
Undisturbed_recovery/
cl_time.dat
Recovery_wout_artificial_recharge/
cl_time.dat
Recovery_wout_withdrawal/
cl_time.dat
Recovery_after_wetseason/
cl_time.dat
No_washover/
cl_time.dat
No_wash_No_art/
cl_time.dat
source/
SUTRA_tides/
contains fortran files for SUTRA with modifications for reading
tide data externally at specified time steps and for an unsaturated condition with
linear functions of saturation and permeability with pressure
SUTRA_WT/
contains fortran files for SUTRA modified for a water-table
condition by William R. Souza (modified code marked with WRS05052016)
GW-chart/
contains executable USGS program for reading observation
well data
Python_Script/
contains python script to read the XXX.nod file and produce
a plot of equivalent chloride concentration over time for the nodes representing
the airfield skimming well
webrelease/
This directory contains the FGDC XML metadata file which
describes the whole model archive and the browse graphic used for display

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Gingerich, S.B., Voss, C.I, and Johnson, A.D.

, 2017, Seawater-flooding events and

02/14/2017 Model archive created

Descriptions of the data in each subdirectory are given to facilitate

The model simulations were run with two versions of SUTRA

versions have been included in this data release.

Users are encouraged to review the paper

Reconstructing the data release from the online data release:

The highest-level directory structure of the original data release is:

Optional system requirements:

Running the model(s):

The simulations can be run by opening a command line/terminal in the model

appropriate output directory. For example, calibration/verification model

Recovery_calibrated/ (called managed recovery in paper)

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