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This article can be cited before page numbers have been issued, to do this please use: S. Chattopadhyay,
S. Roy, M. G. B. Drew, A. Frontera and A. Bauza, Dalton Trans., 2017, DOI: 10.1039/C6DT04906K.
Volume 45 Number 1 7 January 2016 Pages 1–398 This is an Accepted Manuscript, which has been through the
Dalton Royal Society of Chemistry peer review process and has been
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Page 1 of 38 Dalton Transactions
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DOI: 10.1039/C6DT04906K
NiO2Cd core
Shouvik Chattopadhyay*a
a
Department of Chemistry, Inorganic Section, Jadavpur University, Kolkata - 700032, India.
synthesized and characterized by elemental analysis, IR, UV-Vis and fluorescence spectroscopy.
The structures of the complexes have been confirmed by single crystal X-ray diffraction studies.
In each complex, nickel(II) is placed in the inner N2O2 environment and cadmium(II) is placed in
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the outer O4 compartment of the compartmental Schiff base. Furthermore, the importance of
unconventional C-H∙∙∙π (chelate) interactions in the solid state of complexes 1 and 2 have been
described by means of DFT and MEP calculations and characterized using NCI plots. All
complexes show photoluminescence at room temperature upon the irradiation of ultraviolet light.
Introduction
transition and non-transition metal complexes with well-known salen type compartmental Schiff
bases (with inner N2O2 and outer O4 cores), prepared by the condensation of 3-
alkoxysalicyalaldehyde with several diamines.1 The bridging ability of the phenoxy oxygen
atoms of salen type Schiff bases made them popular in preparing such complexes2 which have
been used in non-linear optics, biological modelling application, magnetism, catalysis, opto-
electronic devices, molecular architectures etc over many years.3 Although many complexes
have been found to show ferromagnetic properties,4 lack of magnetic exchange interactions in
working on magnetic materials. However, the importance of the cadmium(II) complexes lies in
their strong luminescence properties and potential applications in electronic and optoelectronic
devices.5 Focusing on the coordination chemistry, nickel(II) is a very attractive species for its
flexibility in attaining square planar, trigonal bipyramidal, square pyramidal, octahedral etc
geometries with coordination numbers varying from 4 to 6.6 Cadmium, on the other hand, with a
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d10 electronic configuration may also adopt varieties of geometries with no CFSE in any
geometry.7
azide etc have also been used to prepare such complexes.8 However, the use of a diamine to
bridge the hetero-binuclear units to prepare a polynuclear complex has not previously been
reported in the literature. Interactions based on π-systems are well established in crystal
engineering, which conventionally involve aryl rings. Among them, C-H∙∙∙π interactions9 are
important in stabilizing crystal structures and can be routinely evaluated during the analysis of
where the accepting π-system is a chelate ring have been defined and described.10 This emerging
type of supramolecular interaction is not usually taken into account by scientists working in
crystal engineering, despite the fact that the situation is analogous to an aromatic π-system owing
to the delocalisation of the π-electron density over the chelate ring. Thus, if chelate rings can
described work by Zaric and coworkers,11 so should chelate rings also participate in C-H∙∙∙π
(chelate) interactions. In fact Zaric and coworkers have identified, C-H∙∙∙π (chelate) interactions
literature also mention to some extent the existence of C-H∙∙∙π (chelate) interactions; however
In the present work, a compartmental Schiff base has been used to prepare three hetero-
This is the first example of any diamine bridged polynuclear nickel(II)/cadmium(II) complex
H∙∙∙π(chelate) interactions has been studied by means of DFT calculations. This type of
interaction, which is present in the solid state of complexes 1 and 2 has been evaluated
energetically and characterized using the non-covalent interaction plot (NCI plot) and molecular
electrostatic potential (MEP) surface computational tools. All three complexes exhibit
photoluminescence in DMF solution at room temperature upon the irradiation of ultraviolet light.
Experimental Section
Nickel(II) thiocyanate tetrahydrate was prepared in our laboratory following the literature
method.14 All other materials were commercially available, reagent grade and used as purchased
Synthesis
A methanol solution (10 ml) of 3-ethoxysalicylaldehyde (332 mg, 2 mmol) and 1,3-
diaminopropane (0.13 ml, 1 mmol) was refluxed for ca. 1 h to form the hexadentate ligand H2L.
The ligand was not isolated and used directly for the synthesis of the complexes.
A methanol (10 ml) solution of cadmium(II) chloride dihydrate (219 mg, 1 mmol) was
added to the methanol solution (20 ml) of H2L. The resulting solution was stirred for 15 min. A
methanol (10 ml) solution of nickel(II) thiocyanate tetrahydrate (250 mg, 1 mmol) was then
added . The stirring was continued for about 2h. A few drops of DMF were then added to the
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solution. Single crystals, suitable for X-ray diffraction, were obtained after 3-4 days on slow
Yield: 288 mg (74%); based on nickel(II). Anal. Calc. for C28H38CdClN5NiO6S (FW
=779.25): C, 43.18; H, 4.90; N, 9.91; Found: C, 43.2; H, 4.9; N, 8.9%. ESI-MS (positive ion
mode, DMF) m/z: 449.09 [100%, Ni(L)Na]+; 427.11 [Ni(L)H]+. FT-IR (KBr, cm-1): 1652 (C=N);
2077 (NCS). UV-VIS [λmax(nm)] [εmax(Lmol-1cm-1)] (DMF): 273 (1.9104) [π-π*]; 357 (1.0104)
[n-π*]; 585 (1.8 101) [3T1g(F) 3A2g(F)]; 805(4.11) [3T2g(F) 3A2g(F)]. Fluorescence: [exi
(nm)] = 360, [emi (nm)] = 402. Lifetime [τavg (ns)] = 6. Fluorescence quantum yield = 0.004;
Magnetic moment = 3.11 BM. Experimental PXRD patterns of the bulk products are in good
agreement with the simulated XRD patterns from single crystal X-ray diffraction results,
cadmium(II) acetate dihydrate (266 mg, 1 mmol) was used instead of cadmium(II) chloride.
Single crystals, suitable for X-ray diffraction, were obtained after 3-4 days on slow evaporation
Yield: 260 mg (72%); based on nickel(II). Anal. Calc. for C26H35CdN3NiO8S (FW
=720.74): C, 43.35; H, 4.87; N, 5.81; Found: C, 43.3; H, 4.9; N, 5.8%. ESI-MS (positive ion
mode, DMF) m/z: 449.09 [100%, Ni(L)Na]+; 427.11 [Ni(L)H]+. FT-IR (KBr, cm-1): 1626 (C=N);
2087 (NCS). UV-VIS [λmax(nm)] [εmax(Lmol-1cm-1)] (DMF): 274 (2.2104) [π-π*]; 356 (1.1104)
[n-π*]; 567 (1.5101) [3T1g(F) 3A2g(F)]; 802 (5.12) [3T2g(F) 3A2g(F)]. Fluorescence: [exi
(nm)] = 356, [emi (nm)] = 398. Lifetime [τavg (ns)] = 2. Fluorescence quantum yield = 0.003,
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Magnetic moment = 3.10 BM. Experimental PXRD patterns of the bulk products are in good
agreement with the simulated XRD patterns from single crystal X-ray diffraction results,
A methanol (10 ml) solution of cadmium(II) chloride dihydrate (219 mg, 1 mmol) was
added to the methanol solution (20 ml) of H2L. The resulting solution was stirred for 15 min. A
methanol (10 ml) solution of nickel(II) thiocyanate tetrahydrate (250 mg, 1 mmol) was then
added to it and stirred for 15 min. Subsequently 1 mmol of 1,3-diaminopropane (0.13 ml) was
added. The stirring was continued for about 2h. Single crystals, suitable for X-ray diffraction,
were obtained after 3-4 days on slow evaporation of the solution in open atmosphere.
Yield: 262 mg (74%); based on nickel(II). Anal. Calc. for C25H34CdClN5NiO4S (FW
=707.19): C, 42.60; H, 4.55; N, 9.91; Found: C, 42.6; H, 4.6; N, 9.9%. ESI-MS (positive ion
mode, DMF) m/z: 449.09 [100%, Ni(L)Na]+; 427.11 [Ni(L)H]+. FT-IR (KBr, cm-1): 1624 (C=N);
2081 (NCS). UV-VIS [λmax(nm)] [εmax(Lmol-1cm-1)] (DMF): 272 (1.7104) [π-π*]; 357
(0.78103) [n-π*]; 565 (0.21102) [3T1g(F) 3A2g(F)]; 906 (8.22) [3T2g(F) 3A2g(F)].
Fluorescence: [exi (nm)] = 350, [emi (nm)] = 390. Lifetime [τavg (ns)] = 2. Fluorescence quantum
yield = 0.005, Magnetic moment = 3.13 BM. Experimental PXRD patterns of the bulk products
are in good agreement with the simulated XRD patterns from single crystal X-ray diffraction
Physical measurements
Elemental analyses (carbon, hydrogen and nitrogen) were performed using a Perkin
Elmer 240C elemental analyzer. IR spectra in KBr (4500-500 cm-1) were recorded with a Perkin
Elmer Spectrum Two spectrophotometer. Electronic spectra in DMF were recorded on a Perkin
(R3809) and were analyzed by using IBHDAS6 software. The emission in the complexes is
fluorescence quantum yields for all complexes were measured in DMF using quinine sulfate (in
0.5 (M) H2SO4, = 0.54) as the quantum yield standard. Intensity decay profiles were fitted to
fractional contribution to the time resolved decay of the component with a lifetime of i. A bi-
exponential function was used to fit the decay profile for complexes, with obtaining χ2 close to 1.
The intensity-averaged lifetimes (av) were determined from the result of the exponential model
i i
2
using av i
, where αi and I are the pre-exponential factors and excited state
i
i i
luminescence decay time associated with the i-th component, respectively. The magnetic
magnetometer, model 155 at room temperature (300 K) in a 5000G magnetic field, and
diamagnetic corrections were performed using Pascal's constants. Effective magnetic moments
were calculated using the formula µeff = 2.828(χMT)1/2, where χM is the corrected molar
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susceptibility. The instrument was calibrated using metallic nickel. Powder X-ray diffraction
the complexes were ground with a mortar and pestle to fine powders which were then dispersed
with alcohol onto a zero background holder (ZBH). The alcohol was allowed to evaporate to
provide an even coating of powder adhered to the sample holder. The simulated PXRD patterns
of complexes were calculated from the single crystal structural data (Cifs) using the CCDC
Mercury software.
X-ray crystallography
Suitable crystals of complexes 1-3 were picked, mounted on a glass fibre and diffraction
intensities were measured with an Oxford Diffraction XCalibur diffractometer equipped with
Mo-Kα radiation (λ =0.71073 Å, 50 kV, 40 mA) at an ambient temperature (150 K). Data
collection and reduction were performed with the Crysalis software.15 The structures of the three
complexes were solved by direct methods using SHELXS-97 and refined by full-matrix least
squares on F2, using the SHELXL-97 package16. Non-hydrogen atoms were refined
anisotropically. The hydrogen atoms were placed in their geometrically idealized positions and
constrained to ride on their parent atoms. Hydrogen atoms attached with nitrogen and oxygen
atoms were located by difference Fourier maps. Programs used included PLATON,17
DIAMOND,18 ORTEP19 and MERCURY.20 Details of crystallographic data and refinement are
given in Table 1.
Theoretical methods
The calculations of the non-covalent interactions of complexes 1 and 2 were carried out
21
with TURBOMOLE software, version 7.0 using the M06-2X/def2-TZVP level of theory. To
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evaluate interactions in the solid state, crystallographic coordinates have been used. This
procedure and level of theory have been successfully used to evaluate similar interactions.22 The
interaction energies were computed by calculating the difference between the energies of isolated
monomers and their assembly. The interaction energies were corrected for the Basis Set
Superposition Error (BSSE) using the counterpoise method.23 The MEP surface calculations
have been performed by means of the G09 software at the M06-2X/6-31+G* level of theory.24
The NCI plot is a visualization index based on the electron density and its derivatives, and
correspond to both favourable and unfavourable interactions, as differentiated by the signs of the
second density Hessian eigenvalues and defined by the isosurface colour. NCI analysis allows an
assessment of host-guest complementarity and the extent to which weak interactions stabilize a
complex. The information provided by NCI plots is essentially qualitative, i.e. which molecular
regions interact. The colour scheme is a red-yellow-green-blue scale with red for ρ+cut (repulsive)
and blue for ρ−cut (attractive). Yellow and green surfaces correspond to weak repulsive and weak
attractive interactions, respectively.25 It should be mentioned that the theoretical DFT study has
been carried out only for complexes 1 and 2 because we have focused our attention to the
analysis of the C-H···π (chelate ring) interactions, which are not observed in complex 3.
Moreover, the intrinsic polymeric nature of complex 3 complicates the analysis of the non-
Synthesis
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potential octadentate compartmental Schiff base ligand, H2L, following the literature method.26
This Schiff base (H2L) on reaction with cadmium(II) chloride dihydrate followed by the addition
of nickel(II) thiocyanate tetrahydrate in DMF gives rise to complex 1. The same Schiff base
(H2L) on reaction with cadmium(II) acetate dihydrate followed by the addition of nickel(II)
thiocyanate tetrahydrate in methanol forms complex 2. On the other hand, complex 3 has been
produced by reaction with cadmium(II) chloride dihydrate followed by the addition of nickel(II)
Structure description
The X-ray crystal structure determinations reveal that both complexes crystallize in
orthorhombic space groups P212121. Important bond lengths and bond angles are gathered in
The molecular structures of complexes 1 and 2 are built from isolated hetero-binuclear
Perspective view of complexes 1 and 2 are depicted in Figures 1 and 2, respectively. The Schiff
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base, H2L, is a potential octadentate compartmental Schiff base having inner N2O2 and outer O4
compartments with nickel(II) occupying the inner N2O2 cavity and cadmium(II) occupying the
outer O4 cavity. In both complexes, nickel(II) and cadmium(II) centres are hexa-coordinated.
The nickel(II) centres, Ni(1), have distorted octahedral geometry, where two imine nitrogen
atoms, N(19) and N(23) and two phenoxo oxygen atoms, O(11) and O(31), of the deprotonated
di-Schiff base constitute the equatorial plane. Bond lengths in the two molecules are similar as
shown in Table 2. In the equatorial plane the Ni-O and Ni-N bond distances are similar being in
the range 2.015(3)-2.041(3) Å. The deviation of the coordinating atoms, O(11), O(31), N(23)
and N(19), in the basal plane from the mean plane passing through them are 0.023(3), -0.024(2),
0.020(3) and -0.021(3) Å, respectively in complex 1 and -0.027(3), 0.018(3), -0.025(4) and
0.014(4) Å respectively in complex 2. The deviation of Ni(1) from the same plane is negligible
coordinated axially by two oxygen atoms, O(1) and O(5) from two DMF molecules at distances
of 2.109(3), 2.109(3)Å , whereas in complex 2, the nickel(II) centre is coordinated axially by two
oxygen atoms, O(1) and O(5) from two methanol molecules at 2.174(4), 2.118(3) Å thus
The coordination sphere around the nickel(II) atom in both complexes is only slightly
distorted from octahedral with all angles less than 10o away from the ideal values of 90o and
180o. On the other hand, while the cadmium(II) in each complex is hexa-coordinated, its
environment is highly distorted octahedral with Ligand-Cd(II)-Ligand angles varying from 65o to
155o. Cadmium(II) is coordinated by two phenoxo oxygen atoms, O(11) and O(31) in the range
2.243(3)-2.260(3) Å, and two ethoxy oxygen atoms, O(131) and O(291), in the significantly
longer range 2.507(4)-2.591(2)Å. The two other positions are occupied by monodentate anions.
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Both complexes contain a nitrogen atom, N(1), from a terminal thiocyanate at 2.214(4), 2.169(5)
Å respectively while the sixth coordination site is occupied by a chlorine atom, Cl(2), in complex
1 at 2.429(9) Å and by an oxygen atom, O(61), at 2.159(4) Å from an acetate group in complex
2. The bridging angles, Ni(1)-O(11)-Cd(1) and Ni(1)-O(31)-Cd(1), are 103.0(1)° and 102.7(1)°
respectively for complex 1, 103.6(1)° and 103.2(1)° respectively for complex 2. The dihedral
angles between the Ni(1),O(31),O(11) and Cd(1),O(31),O(11) planes are 5.49° in complex 1 and
5.40° in complex 2 indicating that the complex core Ni(1),O(31),O(11),Cd(1) is almost planar.
189.5(7) for complex 1 and q = 0.526(6) Å; θ = 134.6(5); = 6.4(8) for complex 2.27
In complex 2, the oxygen atom, O(63), of an acetate molecule forms two acceptor
hydrogen bonds, one intramolecular with the hydrogen atom, H(51), attached to oxygen atom,
O(1), and one intermolecular with symmetry related hydrogen atom, H(41)a, {Symmetry
(Fig. 3). The details of the geometric features of the hydrogen bonding interactions are given in
Table 4.
[(SCN)(Cl)Cd(L)Ni(NH2CH2CH2CH2NH2)]n (3)
The X-ray crystal structure determination reveals that complex 3 also crystallizes in
orthorhombic space group P212121. Important bond lengths and bond angles have been given in
Complex 3 consists of a chain system with the repeating hetero-binuclear neutral units,
diaminopropane bridge. In each bimetallic unit, the nickel(II) and cadmium(II) centres
respectively occupy the inner N2O2 and outer O4 sites of the potential octadentate deprotonated
Schiff base, L2-. A perspective view of the binuclear unit with the corresponding atom labelling
scheme is depicted in Fig. 4. Nickel(II) and cadmium(II) centres are bridged by two phenoxo
oxygen atoms, O(11) and O(31), with Ni(1)∙∙∙Cd(1) distance of 3.386(1) Å. The bridging angles,
Ni(1)-O(11)-Cd(1) and Ni(1)-O(31)-Cd(1), are 102.2(2)° and 103.8(2)° respectively. The angles
nickel(II) and cadmium(II) have six-coordinate environments similar to those found in 1 and 2,
thus being slightly distorted octahedral and highly distorted respectively. Ni(1) is coordinated by
two imine nitrogen atoms, N(19) and N(23), two phenoxo oxygen atoms, O(11) and O(31), of
the deprotonated potential octadentate Schiff base ligand L2- which constitute the equatorial
plane. The fifth coordination site is occupied by one nitrogen atom, N(2) from a 1,3-
end-to-end bridged 1,3-daminopropane occupy the sixth coordination site of nickel(II) to form a
phenoxo oxygen atoms, O(11) and O(31) at 2.278(4), 2.265(4)Å, two ethoxy oxygen atoms,
O(131) and O(291), at 2.635(4), 2.564(5)Å. The other two coordination sites are occupied by a
nitrogen atom, N(1) from a terminal thiocyanate at 2.167(6) Å and a chlorine atom, Cl(2) at
357.6(11).27
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The hydrogen atom, H(6A), attached to the nitrogen atom, N(6), is involved in a strong
hydrogen bonding interaction with the sulphur atom, S(1), of a symmetry related (-x,y-1/2, 1/2-z)
thiocyanate from a neighbouring molecule (Figure 5a). This produces a three dimensional
architecture (Fig 5b). The details of the geometric features of the hydrogen bonding interactions
Chirality of complexes
All three complexes crystallize in Sohncke space group, P212121. From the flack
parameter values {0.010(15) [complex 1], 0.05(2) [complex 2], 0.02(3) [complex 3]}, it could be
concluded that the crystals are all enantiopure. The absolute configuration coordination
compounds are represented by the symbols or . The absolute configuration are determined by
representing the chelate rings in non-orthogonal projection. A chelate ring of six coordinated
complex, whose ligators form an approximate octahedron, is represented by the edge formed by
its two ligators. If two such edges are skew, the pair could be associated with either (a) or (b) of
Fig. 6. Figures 6(a) and 6(b) represent right handed and left handed helices, respectively. In the
present case, all three complexes have configurations (right handed helix) based on the ligand
environment around cadmium(II). A closer look of the ligand environment around cadmium(II)
in each complex is shown in Figure 7 along with the representation of pairs of non-orthogonal
Remarkably, complex 1 forms an infinite 1D chain in the solid state (Fig. 8a) that is
governed (among other interactions) by the formation of two concurrent C-H∙∙∙π (chelate)
interactions, one (C-H aromatic) with the six-membered nickel(II) chelate ring and the other (C-
H exocyclic belonging to the C=N group) with the five-membered cadmium(II) chelate ring. The
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details of the geometric features of the C-H∙∙∙π(chelate) interaction are given in Table 5. To the
best of our knowledge, this is the first study that describes this type of interesting arrangement.
The conventional C-H∙∙∙π noncovalent bonding involves the interactions of the electron rich π-
cloud of an aromatic ring with the partially positive H atom. This type of interaction is well
known33 and database studies have shown that C-H∙∙∙π(aromatic) distances typically range from
2.8 to 3.2 Å and that a C-H∙∙∙π interaction is considered short when it is < 3.05 Å.9 A Table (S2)
has been incorporated containing the details of geometric features of the C-H∙∙∙π(aromatic) in the
active Lewis acid/base sites using the overall electrostatic potential plotted on the van der Waals
surface of complex 1 (Fig. 8b) have been calculated. It can be observed that the electrostatic
potential is positive in the aromatic and exocyclic C-H bonds (16 kcal/mol and 24 kcal/mol)
respectively. Moreover, the MEP value over the aryl ring of the ligand is negative (-15 kcal/mol).
Interestingly, it is more negative over the chelate ring, especially over the five-membered
cadmium(II) chelate ring likely due to the presence of two oxygen atoms. Thus, the MEP results
indicate that the C-H∙∙∙π interactions involving the chelate rings are electrostatically more
favoured than that involving the aryl ring. A dimer of the X-ray structure has been extracted and
the interaction energy has been evaluated, which is large and negative (ΔE1 = -22.9 kcal/mol,
Fig. 8c) due to the formation of both C-H∙∙∙π (chelate) interactions in addition to other van der
Waals interactions. Both C-H∙∙∙π distances (from hydrogen atom to the ring centroid) are ca 3 Å
a value typical of C-H∙∙∙π (arene) interaction.9 In order to characterize weak van der Waals
interactions shown in Fig. 8c, non-covalent interactions (NCI plot) of this model dimer have
been computed. The NCI plot is a visualization index that enables efficient identification and
complementarity and the extent to which weak interactions stabilize a complex (see the
Computational Methods section). The information provided is essentially qualitative, that is,
which molecular regions interact. The representation of the NCI plot computed for the dimer of
complex 1 is shown in Fig. 8d. An extended region can be observed between the fused five-
membered cadmium(II) and six-membered nickel(II) chelate rings and the C-H bonds, thus
confirming the interaction. Other regions are also present between the C-H bonds and the
coordinated DMF thus indicating the existence of additional van der Waals interactions and
Complex 2 also forms an infinite 1D chain where short C-H∙∙∙π(chelate) interactions are
established (blue dashed lines in Fig. 9a) in addition to conventional C-H∙∙∙π(chelate) interactions
(black dashed lines). The MEP surface of complex 2 (Fig. 9b) has been computed and it can be
observed that the six-membered nickel(II) chelate ring is not accessible to π-interactions due to
the presence of the coordinated methanol molecule. In contrast the other chelate ring is well
suited for establishing π-interactions because the adjacent axial ligand is linear thiocyanate. The
MEP value over the center of the chelate ring is -19 kcal/mol, appropriate for interacting with
Lewis acids. The MEP value at the hydrogen atom of the coordinated methanol is the most
positive one (+40 kcal/mol) and the MEP value at the thiocyanate ligand is negative (-45
kcal/mol). The interaction energy of one dimer retrieved from the infinite 1D chain (Fig. 9c)
which includes three different short C-H∙∙∙π interactions has been calculated. These consist of
and one conventional C-H∙∙∙π(arene) interaction. It should be mentioned that the observed
distance for the C-H∙∙∙π(chelate) interaction is very short (3.17 Å from the carbon atom).
Moreover, a strong hydrogen bonding interaction between the coordinated methanol and the
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acetate ligand is also formed. This striking combination of interactions explain the large binding
energy (ΔE2 = -46.6 kcal/mol). In an effort to roughly evaluate the contribution of the two
been used where the acetate anion has been replaced by a formate anion (small arrow in Fig. 9d)
so that all these three interactions are removed. As a result, the binding energy is reduced to ΔE3
= -12.8 kcal/mol and the difference (-2.1 kcal/mol) is a rough estimation of the energy of the
similar to that reported for conventional C-H∙∙∙π(arene) interactions.9 In order to characterize the
interactions shown in Fig. 9c, non-covalent interactions (NCI plot) of this model dimer have
been computed. The representation of the NCI plot is shown in Fig. 9e and a large green region
can be identified over the five-membered cadmium(II) chelate ring and directed towards the
relevant C-H bond thus confirming the C-H∙∙∙π interaction. Interestingly this isosurface
encompasses the whole five-membered cadmium(II) ring thus indicating that the interaction is
with the whole methyl group of the acetate. An extended green isosurface also characterizes the
hydrogen bonding and C-H∙∙∙π(thiocyanate) contacts, thus indicating that they are stronger
interactions.
CSD Search
interactions in the solid state, the Cambridge Structural Database (CSD)34 search for similar
systems have been done. In particular the fragment depicted in Fig. 10a has been used where a
Schiff base tetradentate compartmental ligand is coordinated to two transition metals and,
consequently, two types of chelate rings are present (five and six-membered rings). Two separate
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searches have been performed, one using the six-membered chelate ring and the other one using
the five membered chelate ring. Several geometric criteria has been used for performing the
searches (Fig. 10a). First the distance between the ring centroid and the hydrogen atom should
range from 2.5 to 3.2 Å for selecting a hit. Second, to ensure that the hydrogen atom is located
approximately over the centre of the chelate ring, three angles (αn, n = 1-3) have been defined
and imposed that their values should be comprised between 70º and 110º for selecting a hit. For
the six-membered chelate ring search, 57 structures and a total of 102 fragments have been
retrieved from the CSD showing C-H∙∙∙π(chelate ring) interactions. The histogram plot (number
of fragments vs distance) for this search is given in Fig. 10b. It can be observed that the majority
of hits are comprised at distances between 2.95 and 3.10 Å, similarly to C-H∙∙∙π(arene)
interactions.9 The results for the five-membered chelate ring search are shown in Fig. 10c. The
number of structures/fragments obtained from the CSD search is similar to that found for the six-
membered chelate ring. However, the histogram plot is slightly different, likely due to the
smaller size of the ring. In this case the major number of hits are observed at distances > 3.0Å.
Finally, in Fig. 11, two selected examples from the afore mentioned searches have been
shown to illustrate the C-H∙∙∙π(chelate ring) interactions in the solid state. The first one
corresponds to the CUMVOW34 structure where the six membered manganese chelate ring
establishes two concurrent interactions. One of them is intramolecular (2.73 Å) with the
coordinated methanol molecule where one C-H bond of the methanol interacts with the chelate
interaction at the opposite side of the chelate ring (2.97 Å), (Fig. 11a). As an example of five
membered chelate ring, we have selected FIPKUK35 that forms self-assembled supramolecular
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dimers in the solid state where two symmetrically equivalent C-H∙∙∙π(chelate ring) interactions
Concluding Remarks
nickel(II)/cadmium(II) complexes containing NiO2Cd cores are described is this paper. Most
which is eventually the first example of any nickel(II)/cadmium(II) complex with N2O4 donor
compartmental Schiff base. Complex 1 forms an infinite 1D chain in the solid state governed
mainly by the formation of C-H∙∙∙π(chelate) interactions, one with the six-membered nickel(II)
chelate ring [Ni(1)-O(11)-C(12)-C(17)-C(18)-N(19)] and the other one with the five-membered
cadmium(II) chelate ring [Cd(1)-O(11)-C(12)-C(13)-O(131)]. The MEP value over the chelate
ring is more negative than that over the aryl ring of the ligand, indicating the C-H∙∙∙π interactions
involving the chelate rings are electrostatically more favoured than that involving the aryl ring.
Complex 2 also forms an infinite 1D chain where short C-H∙∙∙π(chelate) interactions are
(thiocyanate) interactions was also computed (-2.1 kcal/mol). The existence of the proposed
noncovalent interactions in complexes 1 and 2 are also confirmed using the NCI plot. Finally, we
have explored the CSD to provide further support to the importance of this interaction in the
solid state.
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Electronic supplementary information (ESI) available: Figures S1-S13 and Tables S1 and S2.
CCDC 1487862, 1487863 and 1487864 contain the supplementary crystallographic data for 1, 2
and 3 respectively.
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40-45.
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Complex 1 2 3
Cd(1)-O(11) 2.260(3) 2.243(3) 2.278(4)
Cd(1)-O(31) 2.259(2) 2.255(3) 2.265(4)
Complex 1 2 3
O(11)-Cd(1)-O(131) 65.00(8) 66.76(13) 64.5(2)
O(11)-Cd(1)-O(291) 137.66(8) 136.65(12) 137.0(2)
O(11)-Cd(1)-O(31) 72.09(9) 71.51(12) 71.9(2)
O(11)-Cd(1)-N(1) 106.50(11) 106.82(19) 112.7(2)
O(31)-Cd(1)-O(291) 66.31(8) 65.14(12) 65.1(2)
O(31)-Cd(1)-O(131) 137.02(9) 137.35(13) 136.4(2)
O(31)-Cd(1)-N(1) 107.83(10) 114.29(17) 110.7(2)
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O(31)-Ni(1)-N(2) - - 89.8(2)
O(31)-Ni(1)-N(6)a - - 85.0(2)
N(2)-Ni(1)-N(19) - - 87.8(2)
N(2)-Ni(1)-N(23) - - 94.3(2)
N(2)-Ni(1)-N(6)a - - 172.1(2)
Table 4: Hydrogen bond distances (A˚) and angles () for complexes 2 and 3.
Table 5. Details of the C-H∙∙∙π(chelate) interactions in complexes 1 and 2, the atomic charges of
hydrogen (QH) and sum of Mulliken atomic charges (C,O,N) in the chelate ring (ΣQCR) at the
Fig. 1: Perspective view of complex 1 with atom numbering scheme. Hydrogen atoms have been
Fig. 2: Perspective view of complex 2 with atom numbering scheme. Hydrogen atoms have been
Fig. 3: Perspective view of the hydrogen bonding interactions in complex 2. Only the relevant
a
atoms are shown in the figure. Symmetry transformation: = -
1+x,y,z.
Fig. 4: Perspective view of complex 3 with selective atom numbering scheme. Hydrogen atoms
(a)
(b)
Fig. 5: (a) Highlighted hydrogen bonding interaction of complex 3. Only hydrogen atoms
a
have been omitted for clarity. Symmetry transformation: = (-x,y-1/2, 1/2-z). (b) Three
Fig 6: The figure shows pairs of non-orthogonal skew lines in projection upon a plane parallel to
both lines, where (a) corresponds to right handed helix leading to Δ configuration and (b)
(a)
(b)
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(c)
Fig 7: Perspective views of the ligand environments around cadmium(II) in complexes 1-3 (a-c
respectively) and the pairs of non-orthogonal skew lines in projection upon a plane parallel to
Fig. 8: (a) X-ray fragment of complex 1 showing C-H∙∙∙π interactions as dotted lines. (b) MEP
surface with indication of electrostatic potential values at selected points. (c) Theoretical model
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used to evaluate the C-H∙∙∙π (chelate) interactions. Distances in Å. (d) NCI plot of the self-
assembled dimer of complex 1. NCI plot only shows the intermolecular interactions.
Fig. 9: (a) X-ray fragment of complex 2 with C-H…π interactions shown as dotted lines. (b)
MEP surface with indication of electrostatic potential values (kcal/mol) at selected points. (c,d)
Theoretical models used to evaluate the C-H∙∙∙π(chelate) interactions, shown as dotted lines.
Distances in Å. (e) NCI plot of the self-assembled dimer of complex 2. NCI plot only shows the
intermolecular interactions.
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Fig. 10: (a) Query and criteria used for the CSD searches. (b,c) Histogram plots for the C-H∙∙∙π
interactions (N = number of fragments, d = distance from the ring centroid to the interacting H
atom).
Fig. 11: CUMVOW (a) and FIPKUK (b) structures exhibiting C-H∙∙∙π(chelate ring) interactions.
Distances in Å.