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Contents

1. Introduction 2. Fluids 3. Physics of Microfluidic Systems 4. Microfabrication Technologies


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9. Liquid Handling 10.Microarrays 11.Microreactors 12.Analytical Chips 13.Particle-Laden Fluids a. Measurement Techniques b. Fundamentals of Biotechnology c. High-Throughput Screening

5. Flow Control 6. Micropumps 7. Sensors 8. Ink-Jet Technology

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2. Fluids
2.1. General Characteristics 2.2. Dispersions 2.3. Thermodynamics 2.4. Transport Phenomena 2.5. Solutions 2.6. Surface Tension
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2.7. Electrical Properties 2.8. Optical Properties 2.9. Biological Fluids

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4. Transport Phenomena


2.4.1. Diffusion 2.4.2. Viscosity 2.4.3. Transport of Heat 2.4.4. Characteristic Numbers

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4 Summary of Phenomenological Laws


h Transport processes
Arbitrary thermal motion on molecular level Driven by gradients (inhomogeneities) Mostly linear relationship
Flow = coefficient force

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1. Diffusion

h Diffusion
Counteracts nonuniform particle densities Thermal Brownian motion Process underlying all other transport phenomena in fluids

h Ficks first law

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Current density jN antiparallel to gradient Systems seeks homogeneity Diffusion coefficient D [m s-1]

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1. Diffusion
h Ficks second law
Time domain Fixed location

h Combining Ficks first law and equation of continuity

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h Laplace equation

Stationary conditions

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Molecular Picture


h Derivation of diffusion constant D h Flow through surface z1
Between two planes with diverging particle densities Distance = mean free path lmfp Particles reach plane without collisions (statistically)
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Linear term of Taylor expansion


2.4. Transport Phenomena Jens Ducre and Roland Zengerle

2.4.1 Diffusion coefficient


h Calculation of diffusion coefficient
Assumption: uniformly distributed directions of all vectors v

average over Ensemble

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Examples for Diffusional Processes


h Example
Bilateral diffusion from 2-D layer Within pure solvent Initial conditions

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Solution by educated guess

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Examples for Diffusive Processes

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Examples for Diffusive Processes

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Examples for Diffusive Processes

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Examples for Diffusive Processes

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Examples for Diffusive Processes

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Examples for Diffusive Processes


h Example
Diffusion through permeable diaphragm Initial conditions

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1. Laminar Mixing

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Time and Length Scales


h Distance

2
h Time (rules of thumb)

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~l2/D

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Brownian Motion


h Discovered by Scottish Botanist Robert Brown in 1827
Random thermal motion of pollen under microscope

h Closely related to thermal velocity

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h Mesoscopic particle
r0 = 1 m m = 10-15 kg T = 293 K vT 3 mm s-1
2.4. Transport Phenomena

Width of distribution of particle locations

Jens Ducre and Roland Zengerle

2.4.1 Brownian Motion

h Fluorescent particles
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h 4 seconds of data h 2 m in diameter h Left picture


Particles moving in pure water

h Right picture shows


Particles moving in concentrated solution of DNA I.e., in viscoelastic solution in other words
From http://www.deas.harvard.edu/projects/weitzlab/research/brownian.html

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Brownian Motion

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h Erratic motion of single milk droplets in water h Droplets size of about 1 micrometer h Continuously kicked by fast-moving water molecules
Size 5000 times smaller

h Magnification factor of about 10,000


http://www.microscopy-uk.org.uk/

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Boltzmann Distribution


h System at T in thermal equilibrium h Each particle with certain kinetic energy h Potential gradient
Particles accumulate in potential minimum

h Counteracting diffusive current h Boltzmann distribution


Ratio of particle densities Ni at two locations separated by potential difference E

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Boltzmann function at T = 273 K calibrated to N0 = 1

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Maxwell Distribution


h Maxwell distribution
Fraction of molecules in velocity interval [v, v + dv] f(v)dv is probability of finding a vector v in [v, v + dv] Normalization of integrand function f(v) to unity
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Leads to Maxwell distribution

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Maxwell Distribution


h Transformation into energy space
Replacing v with kinetic energy E = 1/2 mv2

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Helps determining which fraction of particles is capable of jumping over a certain potential energy barrier E0 Analytical expression for this fraction

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.1 Reaction Kinetics


h Chemical Reactions
Binary collisions Collision rate scales linearly with vT and thus with T1/2 Concentration of reaction partners c also influences speed of reaction For single step reaction

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Reaction rate

- Governed by stoichiometry (x, y, ...)


Concentrations c(X), c(Y), Reaction velocity constant kc
2.4. Transport Phenomena Jens Ducre and Roland Zengerle

2.4.1 Reaction Kinetics


h Chemical reactions
Activation energy (Gibbs energy) Simple model reaction

For simplicity: G = U = Eact Typically Eact = 60 to 250 kJ mol-1 G = Gact Gact


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G < 0 exothermic G > 0 endothermic

h Velocity constant of reaction


Strongly dependent on T Reaction-specific Arrhenius equation

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4. Transport Phenomena


2.4.1. Diffusion 2.4.2. Viscosity 2.4.3. Transport of Heat 2.4.4. Characteristic Numbers

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.2. Viscosity
h Viscosity
Transfer of momentum from one plane sliding parallel to another Mediated by fluid sandwiched between them Internal friction of fluid

h Newtons law of viscosity


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Relates flow of axial momentum pz = m vZ along lateral x-direction from one plane sliding parallel to another one by viscosity Unit of : Pa s = kg m-1 s-1 or old Poise with 1 Ps = 0.1 Pa s

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.2 Viscosity of Gases


h Assumptions for picture:
- Flow in z-direction - Uniform particle density

Net flux in x-direction of longitudinal momentum pz

Newton
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Viscosity of gases

Kinematic viscosity
- Momentum diffusivity

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.2 Viscosity of Gases

Order: 10-5 Pa s
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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.2 Viscosity of Liquids


h Liquid
Very dense gas lmfp average distance between molecules Macroscopic behavior governed by intermolecular potentials

h Picture
Moving A to A Activation energy E0 External shear stress xz
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- Force f on each particle on wall - f counteracts motion in negative z-direction - Momentum loss transferred to B - Activation energy E = f a / 2

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.2 Viscosity of Liquids


h Transfer of momentum pZ = m vZ
Lateral velocity gradient

net difference between number of jumps +Z and -Z in


positive and negative z-direction, respectively Evaluation of gradient (using Boltzmann Ansatz)
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of molecule between neighbors


2.4. Transport Phenomena

0 fundamental oscillation frequency


Jens Ducre and Roland Zengerle

2.4.2 Viscosity of Liquids


h First order Taylor expansion for E / kBT

Viscosity of liquids
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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.2 Viscosity of Liquids

Order: 10-3 Pa s (gases: 10-5 Pa s)

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.2 Newtonian Fluids


h Newtonian fluids
Classical idealized fluids Linear stress-strain relationship I.e. linear relationship between tension tensor and tensor of rate of deformation (strain rate)
- Viscosity : constant of proportionality

Approximated by gases and simple liquids like water

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h Non-Newtonian fluids
Dispersions containing large structured macromolecules E.g. polymers and proteins

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4. Transport Phenomena


2.4.1. Diffusion 2.4.2. Viscosity 2.4.3. Transport of Heat 2.4.4. Characteristic Numbers

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.3. Transport of Heat


h Equilibrium thermodynamics
System seeks uniform temperature distribution

h Inhomogeneous T-distribution
Transport of heat

h Two basic modes


Diffusion
- Statistical phenomenon (related to entropy) - Summarized in macroscopic thermal conductivity
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Convection
- Far more complicated - Macroscopic ramifications - Minor importance in microworld

h Another frequently encountered issue


Transfer of thermal energy at interface between two media/phases No inter-phase diffusion / exchange of particles Transmission and transition of heat
2.4. Transport Phenomena Jens Ducre and Roland Zengerle

2.4.3 Thermal Conductivity


h Fouriers law
Basic equation quantifying diffusive transport of heat

Net flow of energy jQ Thermal conductivity

h Power

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Cross-section of flow A

h Relaxation time for temperature gradient


Distance d
2.4. Transport Phenomena Jens Ducre and Roland Zengerle

2.4.3 Thermal Conductivity


h Molecular picture
Net energy flow in positive z-direction Using linear terms of Taylor-expansion

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.3 Thermal Conductivity


h Thermal conductivity

Approximating on lmfp

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Independent of particle density N for ideal gas

h Heat diffusion coefficient


kinematic viscosity

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.3 Thermal Conductivity


h Typical values

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.3 Convection

h Macroscopic transport of particles


Characteristic for macro-devices Important for heat transport in liquids and gases

h Forced convection
Transport of heat by macroscopic particle flow E.g., by an external mechanical source
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h Free convection
For instance driven by buoyancy

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.3 Convection

h Convective currents
Stationary or non-stationary flow patterns

h Simulation of convection
Often fail to coincide with experimental observations E.g., atmospheric weather and climate
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h Free Convection of minor importance in microdevices


Laminar conditions
2.4. Transport Phenomena Jens Ducre and Roland Zengerle

2.4. Transport Phenomena


2.4.1. Diffusion 2.4.2. Viscosity 2.4.3. Transport of Heat 2.4.4. Characteristic Numbers

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2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.4. Characteristic Numbers


h Fourier mass number
Characterizes diffusion

Time t, e.g. residence in chemical reaction chamber Typical diffusive time scale tD = l2 / D
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h Schmidt number
Relates viscosity and diffusion

Roughly 0.8 for gases

2.4. Transport Phenomena

Jens Ducre and Roland Zengerle

2.4.4. Characteristic Numbers


h Fourier number
Diffusion of heat Stored thermal energy

h Prandtl number

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Ratio between momentum diffusivity (via dynamic viscosity ) and heat diffusivity (via thermal conductivity )

Specific heat capacity Cm Typically 3 to 300 for liquids and 0.7 to1.0 for gases
2.4. Transport Phenomena Jens Ducre and Roland Zengerle

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