Protein
Saryono
Bagian Biokimia
Protein
Asam
Asam amino
Semua
Protein Types
Protein Types
Protein Types
Protein Types
Enzymes
Amino Acids
Glycine
Proline
Serine
Cysteine (from Met*)
Tyrosine (from Phe*)
Required in diet
Humans incapable of forming requisite
carbon skeleton
Arginine*
Histidine*
Isoleucine
Leucine
Valine
Lysine
Methionine
Threonine
Phenylalanine
Tryptophan
carboxyl
group
functional
group
Dipolar Ion
Peptide bond
Tripeptide
Aspartame
Polypeptide
Struktur protein
Struktur
Ikatan
Struktur
Primary Structure, 1
Secondary Structure
1. Alpha helix
2. Beta plate sheet
3. Triple helix
Alpha Helix
Beta Sheet
Triple Helix
Tertiary
Quaternary
Protein Denaturation
melalui:
-glutamyl cycle
Di
Protein metabolism
8/9 Essential amino acids: must eat them!
Transamination: use the essential AA to
synthesize the others!
Protein metabolism
Another route:
Intestinal bacteria -> ammonia (toxic) ->
liver uses it to make amino acids
Protein metabolism
Protein metabolism
Amino acids are broken down into:
a) ammonia -> urea
b) pyruvate or molecules that are part of
the krebs cycle -> respired for energy, or
converted to fats or glucose
Aspartate
Asparagine
Arginine
Phenylalanine
Tyrosine
Isoleucine
Methionine
Valine
Glutamine
Glutamate
Proline
Histidine
Alanine
Serine
Cysteine
Glycine
Threonine
Tryptophan
Isoleucine
Leucine
Threonine
Tryptophan
Lysine
Phenylalanine
Tyrosine
Keseimbangan nitrogen
Mengacu
Siklus urea
Urea
O 2 CCH 2 CH 2 CCO 2 -
Ketoglutarate
NH3 +
O 2 CCH 2 CH 2 CHCO 2
N
-
Glutamine
synthase
NH3+
CO 2 -
Glutamate
4 Steps
Transamination or
Glutamate
dehydrogenase
5 Steps
Proline
NH3 +
+
H3 NCH 2 CH 2 CH 2 CHCO 2 - Ornithine
Urea Cycle
NH2
NH3 +
+
H2 N=C-HNCH 2 CH 2 CH 2 CHCO 2 Guanidino group
Arginine
GABA Formation
-
NH3 +
O 2 CCH 2 CH 2 CHCO
Glutamate
Glutamate
decarboxylase
CO2
NH3 +
O 2 CCH 2 CH 2 CH 2
Gamma-aminobutyrate
(GABA)
NH3 +
O 2 CCH 2 CH 2 CHCO
Glutamate
N-Acetylglutamate
NHCOCH 3
synthase
2
O
CCH
CH
CHCO
2
2
2
2
CoASAc
N-Acetylglutamate
Activates
CPS-I
4 Steps
Carbamoyl
phosphate
NH4+ + HCO3-NH2CO2PO3-2
NH3+
NH2 CONH CH 2 CH 2 CH 2 CHCO 2 -
Ureido group
Citrulline
NH3 +
+
H3 NCH 2 CH 2 CH 2 CHCO 2 Ornithine
Ornithine
Transcarbamoylase (OTC)
(mitochondria)
Asp
+
NH3 -CHCH2CO 2 CO 2 -
NH3 +
+
H2 N=C-HNCH 2 CH 2 CH 2 CHCO 2 NH-CHCH2 CO 2-
Arginosuccinate
synthase
CO 2 - Arginosuccinate
Ornithine
Transcarbamoylase
(mitochondria)
NH3 +
+
H3 NCH 2 CH 2 CH 2 CHCO 2 -
Fumarate
Urea
H2NCONH2
Ornithine
Arginase
CO 2 -
Arginosuccinase
NH2
-O
2C
NH3 +
TCA Cycle
+
H2 N=C-HNCH 2 CH 2 CH 2 CHCO 2 Arginine
Urea Formation
Occurs
Formation of Serine
CO 2 -
Glucose
Glycolysis
3 Steps
Dehydrogenase
H C OH
NAD+ NADH +
H+
CH2 OPO3-2
3-Phosphoglycerate
Pyruvate
Inhibits
CO 2
C=O
CH2 OPO3-2
3-Phosphohydroxypyruvate
Glutamate
Transaminase
-Ketoglutarate
H C NH3
CO 2 -
Phosphatase
CH2 OH
Serine (Ser)
CO 2 H C NH3 +
CH2 OPO3-2
3-Phosphoserine
Folate
Dihydrofolate
reductase
H 2N
CO 2 -
N
OH
C H2NHR
Tetrahydrofolate
(FH4)
Key intermediate
in biosynthesis of
purines and
formation of
thymine
H
N
N
H 2C
H C NH3 +
Serine
CH2 OH
Serine hydroxymethyl
transferase (PLP-dep.)
CO 2 -
CH2
N
H C NH3
H
Glycine
Important in
biosynthesis of heme,
porphyrins, and purines
-Hydroxybutyrate
NH3+
L-Homocysteine
Cystathionine
lyase
-
HSCH 2CHCO 2
Cysteine
(Non-essential)
FH4
CO 2 -
Cystathionine
-synthase
(PLP-dep.)
NH3 +
OH
CH 3CHCH 2CO 2
- + FH4
2
Methionine
Synthase
(Vit. B12-dep.)
H C NH3 +
Serine
CH2 OH
NH3 +
Cystathionine
Homocysteine
Homocysteinuria
NH2
N
NH3 +
Methionine
S-Adenosyl methionine
synthase
-O
NH3 +
ATP
+
H3NCH2CH2CH 2-S-H2C
CH3
OH OH
S-Adenosyl
Methionine
(SAM)
CO2
-O
CH3
NH2
NH2
Decarboxylated
SAM
OH OH
SAM
Decarboxylase
N
N
O
NH3+
S-Adenosyl
homocysteine
OH OH
R-H
Methyltransferases
R-CH3
Polyamine Biosynthesis
NH3 +
+
H3 NCH 2 CH 2 CH 2 CHCO 2 Ornithine
(from urea cycle)
+
H3 N
N+
H
+
H3 N
CO2
H
+
N
Ornithine
decarboxylase
(ODC)
(PLP-dep.)
+
NH3
Spermine
+
NH3
Putrescine
Decarboxylated
SAM
Spermidine
synthase
Spermine
synthase
5-Methylthioadenosine
Decarboxylated
SAM
+
H3 N
5-Methylthioadenosine
H
+N
H
Spermidine
+
NH3
Polyamines
NH2
H2 N
CHF2
-Difluoromethylornithine (DFMO)
(Eflornithine) - inhibits ODC;
used to treat
Pneumocystis carinii infectons
Arginine-glycine
transamidinase
(Kidney)
NH3 +
+
H2 N=C-HNCH 2 CH 2 CH 2 CHCO 2 -
Glycine
Arginine
H
N
Creatinine
(Urine)
+
H2 N=C-HNCH 2 CO 2 -
Ornithine
HN
Guanidoacetate
Guanidoacetate
Methyltransferase
(Liver)
Non-enzymatic
(Muscle)
N
CH3
Creatine kinase
(Muscle)
Creatine
NH2
+
H2 N=C-NCH 2 CO 2 CH3
NH2
ATP
ADP
+ Pi
SAM + ATP
S-Adenosylhomocysteine
+ ADP
NHPO3 -2
+
H2 N=C-NCH 2 CO 2 CH3
Phosphocreatine
Histidine Metabolism:
Histamine Formation
H
N
+
NH3
CH2 CHCO 2 -
Histidine
decarboxylase
H
N
CH2 CH2NH2
Histidine
CO2
Histamine
Histamine:
Synthesized in and released by mast cells
Mediator of allergic response: vasodilation, bronchoconstriction
(H1 receptors)
H1 blockers: Diphenhydramine (Benadryl)
Loratidine (Claritin)
Stimulates secretion of gastric acid (H2 receptors)
H2N
NH3+
H2O
HO
HN
O
HO OH
CH2CHCO 2-
NADP+
NADPH + H+
H2N
Tetrahydrobiopterin
CHCHCH 3
N
H
Phenylalanine-4Monooxygenase
(Phenylalanine
hydroxylase)
NH3 +
Tyrosine
(Non-essential)
H
H
H
N
N
Dihydrobiopterin
HN
O
N
H
CHCHCH 3
HO OH
Tyr
Phe
Transamination
Phenylpyruvate
(urine)
CH2 CCO 2-
Catecholamine Biosynthesis
HO
HO
Tyr hydroxylase
NH3 +
CH2 CHCO 2 -
NH3+
O2
HO
CH2 CHCO 2-
HO
Tyrosine
HO
Dihydroxyphenylalanine
(DOPA)
DOPA
decarboxylase
Epinephrine
(Adrenaline)
CHCH2 NHCH3
OH
S-Adenosylhomocysteine
Catechol
Methyl
transferase
Dopamine
hydroxylase
Dopamine
SAM
HO
HO
HO
HO
CO2
CHCH2 NH2
OH
Norepinephrine
Brain
L-DOPABlood
in Parkinsonism
L-DOPA
L-DOPA
Dopamine
HO
CH3
HO
Blocks
CH2-C-CO2 H
Carbidopa
NHNH2
Dopamine
HO
Melanin Formation
Tyrosinase
NH3 +
CH2 CHCO 2 -
Tyrosine
HO
NH3+
CH2 CHCO 2-
HO
DOPA
Tyrosinase
Melanin
(Black polymer)
Highly colored
polymeric
intermediates
O
O
CH2 CHCO 2 +
NH3
Dopaquinone
Indole ring
+
NH3
CH2 CHCO 2 -
Trp
hydroxylase HO
N
H
Tryptophan
(Trp)
O2
CH2 CHCO 2 -
HO
Decarboxylase
N
H
5-Hydroxytryptophan
N
H
CO2
5-Hydroxytryptamine (5-HT);
Serotonin
Serotonin
Depression
Serotonin-selective reuptake inhibitors (SSRI)
Migraine
Schizophrenia
Obsessive-compulsive disorders
Chemotherapy-induced emesis
L-Tryptophan
Food supplement promoted for serotonin effects
L-Tryptophan disaster (1989):
Eosinophilia-myalgia syndrome (EMS)
Severe muscle and joint pain
Weakness
Swelling of the arms and legs
Fever
Skin rash
Eosinophilia
Many hundreds of cases; several deaths
Traced to impurities
MAO
CH2CHO
HO
N
H
N
H
Serotonin
Dehydrogenase
CH2 CO 2H
HO
Carcinoid tumors:
Malignant GI tumor type
Excretion of large amounts of 5-HIAA
N
H
5-Hydroxyindole acetic
acid (5-HIAA) (Urine)
2 Steps
N
H
Serotonin
CH2CH2 NHCOCH 3
H3CO
N
H
Melatonin
Melatonin:
Formed principally in pineal gland
Synthesis controlled by light, among other factors
Induces skin lightening
Suppresses ovarian function
Possible use in sleep disorders
Tryptophan Metabolism:
Biosynthesis of Nicotinic Acid
+
NH3
CH2 CHCO 2 -
CO 2H
Several steps
N
H
Tryptophan