http://www.dnai.org/b/index.html
http://highered.mcgraw-hill.com/olc/d
l/120078/micro15.swf
Review: 2.7.A1 Use of Taq DNA polymerase to produce multiple copies of DNA rapidly by the
polymerase chain reaction (PCR).
To summarise:
PCR is a way of producing large quantites of
a specific target sequence of DNA. It is useful
when only a small amount of DNA is avaliable
for testing e.g. crime scene samples of blood,
semen, tissue, hair, etc.
http://learn.genetics.utah.edu/content/labs/pcr/
http://www.slideshare.net/gurustip/genetic-engineering-and-biotechnology-presentat
3.5.U1 Gel electrophoresis is used to separate proteins or fragments of DNA according to
size.
Learn the detail using the virtual
DNA Profiling lab and/or the animation:
Compares sections of DNA between individuals in
order to determine paternity or relationships, as
evidence in criminal cases or to identify species.
http://www.slideshare.net/gurustip/genetic-engineering-and-biotechnology-presentat
3.5.U3 DNA profiling involves comparison of DNA.
Images from:
http://www.dnalc.org/resources/animations/gelelectrophoresis.html
http://www.slideshare.net/gurustip/genetic-engineering-and-biotechnology-presentat
3.5.A1 Use of DNA profiling in paternity and forensic investigations.
In 1986 forensic DNA analysis was first DNA samples are needed from the mother,
used. Originally known as "DNA (potential) father and child in question.
fingerprinting," this type of analysis is now
called "DNA profiling" or "DNA testing" to
distinguish it from traditional skin
fingerprinting.
A = trace evidence
B = homeowner
C = suspect 1
D = suspect 2
http://www.slideshare.net/gurustip/genetic-engineering-and-biotechnology-presentat
3.5.S2 Analysis of examples of DNA profiles.
A = trace evidence
B = homeowner
C = suspect 1
D = suspect 2
Explanation:
We expect 100% match as the
cells left behind are the
perpetrators own cells.
http://www.slideshare.net/gurustip/genetic-engineering-and-biotechnology-presentat
3.5.S2 Analysis of examples of DNA profiles.
A = victim
B = unknown blood at scene
C = suspect 1
D = suspect 2
http://www.slideshare.net/gurustip/genetic-engineering-and-biotechnology-presentat
3.5.S2 Analysis of examples of DNA profiles.
A = victim
B = unknown blood at scene
C = suspect 1
D = suspect 2
Explanation:
We expect 100% match as the
cells left behind are the
perpetrators own cells.
The overlapping bands between the
victim and perpetrator suggest a
close relationship.http://www.slideshare.net/gurustip/genetic-engineering-and-biotechnology-presentat
3.5.S2 Analysis of examples of DNA profiles.
A = trace evidence
B = homeowner
C = prisoner
http://www.slideshare.net/gurustip/genetic-engineering-and-biotechnology-presentat
3.5.S2 Analysis of examples of DNA profiles.
A = trace evidence
B = homeowner No
C = prisoner
Explanation:
Without a stronger match, the
evidence is insufficient to convict the
suspect. He should be released and a
new suspect found.
DNA evidence is being reviewed in
many wrongful conviction lawsuits.
http://www.slideshare.net/gurustip/genetic-engineering-and-biotechnology-presentat
3.5.S2 Analysis of examples of DNA profiles.
A = mother
B = child
C = man 1
D = man 2
http://www.slideshare.net/gurustip/genetic-engineering-and-biotechnology-presentat
3.5.S2 Analysis of examples of DNA profiles.
A = mother
B = child
C = man 1
D = man 2
Explanation:
We expect some around 50% -
match between a parent and their
own child. The mother (A) and man 1
(B) each share two different bands
with the child. Man 1 and 2 share bands
with each other, suggesting they might be
related. http://www.slideshare.net/gurustip/genetic-engineering-and-biotechnology-presentat
3.5.S2 Analysis of examples of DNA profiles.
Sample Questions
1. Identify the smallest DNA
fragment.
2 3 4 5
6
1 2 3 4
http://www.slideshare.net/gurustip/genetic-engineering-and-biotechnology-presentat
3.5.S2 Analysis of examples of DNA profiles.
Sample Questions
1. Identify the smallest DNA
fragment.
2 3 4 5
6
1 2 3 4
http://www.slideshare.net/gurustip/genetic-engineering-and-biotechnology-presentat
3.5.U4 Genetic modification is carried out by gene transfer between species.
Genetic modification
Also known as genetic
engineering, gene transfer or
transgenics.
All living things use the same bases and the same
genetic code.
Each codon produces the same amino acid in
The
transcription and translation, regardless of the
species.
Genetic
So the sequence of amino acids in a polypeptide
remains unchanged.
Code
Therefore, we can take genes from one species and
restriction
insert them into the genome of another species.
is
Universal
Genetic modification
Also known as genetic
engineering, gene transfer or
milk containing spider silk
protein is produced by goats (spider
transgenics.
Salt tolerant tomato plants
silk is immensely strong)
y
There are man
diferent
t
examples. Mos
processed food
contains a GM
ct
https://commons.wikimedia.org/wiki/File:Brown_dervied produ https://commons.wikimedia.org/wiki/File:ARS_O
female_goat.jpg hio_processing_tomato.jpg
https://en.wikipedia.org/wiki/File:E_coli_at_10000
https://commons.wikimedia.org/wiki/File:Golden_Rice x,_original.jpg
3.5.A2 Gene transfer to bacteria using plasmids makes use of restriction endonucleases
and DNA ligase.
Gene Transfer
Requires plasmids, a host cell, restriction enzymes
and ligase.
E. coli bacteria contain
Restriction enzymes
small circles of DNA
cut the desired gene
called plasmids.
from the genome.
alternatively mRNA can treated
with reverse transcriptase to
These can be removed.
produce short DNA segments
Severe Combined Immune Deficiency can be Recently, hereditary blindness was treated with
treated this way: gene therapy:
http://www.sumanasinc.com/scienceinfocus/sif_genether http://www.youtube.com/watch?v=d_YJZn-ft_Ql
apy.html
Bt Corn Genes from Bt have been inserted into maize so GM plants can
produce an insecticidal toxin and therefore be resistant to pests, e.g.
European Corn Borer.
Bacillus thuringiensis (Bt) is a soil GM Foods by Bill Nye
bacterium that produces
insecticidal toxins.
General Potential Benefits:
Introduction of a new trait Bt gene
increases resistance to pests such as the
European Corn Borer https://youtu.be/8z_CqyB1dQo
Results in increased productivity less
land used / greater yield / less crop damage Bt Corn FAQ by Colorado
Less use of chemical pesticides State University:
http://www.ext.colostate.edu/pubs/cr
reduced cost / ecological damage to wild ops/00707.html
the economic cost of farming A hard look at GM crops by
Increased disease resistance Nature:
http://www.nature.com/news/case-stud
Less use of chemical herbicides ies-a-hard-look-at-gm-crops-1.12907
Less use of chemical fetiliser
Increased hardiness better drought/cold Which benefits are
slinity tolerance and therefore can be grown relevant and need
in more locations / has a longer growing assessing for Bt
season Corn?
Increased nutritional content https://commons.wikimedia.org/wiki/File:VegCorn.jpg
3.5.A3 Assessment of the potential risks and benefits associated with genetic
modification of crops.
Bt Corn Genes from Bt have been inserted into maize so GM plants can
produce an insecticidal toxin and therefore be resistant to pests, e.g.
European Corn Borer.
Bacillus thuringiensis (Bt) is a soil GM Foods by Bill Nye
bacterium that produces
insecticidal toxins.
General Potential Benefits:
Introduction of a new trait Bt gene
increases resistance to pests such as the d w it h s cientific
ciate ed with
European Corn Borer : Assessing risks asso he rhttps://youtu.be/8z_CqyB1dQo isks a s so cia t
e o f sc ien ce t o a ss e s st
Results
Naturin increased
cien t is ts attempt
productivity less
t oc k. ( 4 . 8 )
r c h - s r li ve s y. by Colorado
esea / greaterdyield
landrused i fi ed /
c o
ops crop
rless damage or n c aBts studFAQ
eCorn
o t C
Lessge netic
use
ally m
of chemical ly a lt
pesticides
d e with in the B State University:
t is im p li c it
poin
This cost http://www.ext.colostate.edu/pubs/cr
reduced / ecological damage to wild ops/00707.html
the economic cost of farming A hard look at GM crops by
Increased disease resistance Nature:
http://www.nature.com/news/case-stud
Less use of chemical herbicides ies-a-hard-look-at-gm-crops-1.12907
Less use of chemical fetiliser
Increased hardiness better drought/cold Which benefits are
slinity tolerance and therefore can be grown relevant and need
in more locations / has a longer growing assessing for Bt
season Corn?
Increased nutritional content https://commons.wikimedia.org/wiki/File:VegCorn.jpg
3.5.A3 Assessment of the potential risks and benefits associated with genetic
modification of crops.
Bt Corn Genes from Bt have been inserted into maize so GM plants can
produce an insecticidal toxin and therefore be resistant to pests, e.g.
European Corn Borer.
Bacillus thuringiensis (Bt) is a soil
bacterium that produces
insecticidal toxins.
Potential Benefits:
Introduction of a new trait Bt gene
increases resistance to pests such as the
European Corn Borer
Results in increased productivity less
land used / greater yield / less crop damage
Less use of chemical pesticides
reduced cost / ecological damage to wild
the economic cost of farming
Increased disease resistance
Less use of chemical herbicides
Less use of chemical fetiliser
Increased hardiness better drought/cold Which benefits are
slinity tolerance and therefore can be grown relevant and need
in more locations / has a longer growing assessing for Bt
season Corn?
Increased nutritional content https://commons.wikimedia.org/wiki/File:VegCorn.jpg
3.5.A3 Assessment of the potential risks and benefits associated with genetic
modification of crops.
Bt Corn Genes from Bt have been inserted into maize so GM plants can
produce an insecticidal toxin and therefore be resistant to pests, e.g.
European Corn Borer.
Bacillus thuringiensis (Bt) is a soil
bacterium that produces
Bt was successfully
insecticidal toxins.
introduced and Bt Corn is
Potential Benefits: significantly more
Introduction of a new trait Bt gene resistant to pests
increases resistance to pests such as the
European Corn Borer
Maximum productivity has
Results in increased productivity less
not increased, but losses
land used / greater yield / less crop damage
in bad years have been
Less use of chemical pesticides
reduced.
reduced cost / reduced ecological damage
Bt Corn Genes from Bt have been inserted into maize so GM plants can
produce an insecticidal toxin and therefore be resistant to pests, e.g.
European Corn Borer.
Bacillus thuringiensis (Bt) is a soil All risks should be assessed as
bacterium that produces part of a comprehensive testing
insecticidal toxins. programme.
General Potential Risks:
Could be toxic to or cause allergic reactions
in humans
Transferred genes could mutate after
testing
Non-target organisms afected by toxins
Increases resistance to toxin evolves in
pests
Accidental release may result in
competition with native plant species
Super weeds - through cross-breeding the
introduced gene could be transferred to
wild varieties
Biodiversity reduced both plant
populations by direct competition and
animal populations directly and indirectly
could be afected https://commons.wikimedia.org/wiki/File:VegCorn.jpg
3.5.A3 Assessment of the potential risks and benefits associated with genetic
modification of crops.
Bt Corn Genes from Bt have been inserted into maize so GM plants can
produce an insecticidal toxin and therefore be resistant to pests, e.g.
European Corn Borer.
Bacillus thuringiensis (Bt) is a soil All risks should be assessed as
bacterium that produces part of a comprehensive testing
insecticidal toxins. programme.
General Potential Risks: Bt toxin has been used for 30
Could be toxic to or cause allergic reactions years without toxicity in
humans being detected,
in humans
however some experimental
Transferred genes could mutate after
transgenic plants have
testing caused allergic responses.
Non-target organisms afected by toxins
Bt is a very common soil
Increases resistance to toxin evolves in
bacterium therefore
pests organisms have regularly
Accidental release may result in exposed to Bt toxins
competition with native plant species previously. Negative afects
Super weeds - through cross-breeding the on many non-target
introduced gene could be transferred to organisms thought to be
However
minor many species of
wild varieties caterpillars occur in and
Biodiversity reduced both plant around cornfields during the
populations by direct competition and growing season, and might
animal populations directly and indirectly be afected by Bt corn. [see
could be afected 3.5.S3]
https://commons.wikimedia.org/wiki/File:VegCorn.jpg
3.5.A3 Assessment of the potential risks and benefits associated with genetic
modification of crops.
Bt Corn Genes from Bt have been inserted into maize so GM plants can
produce an insecticidal toxin and therefore be resistant to pests, e.g.
European Corn Borer.
Bacillus thuringiensis (Bt) is a soil All risks should be assessed as
bacterium that produces part of a comprehensive testing
insecticidal toxins. programme.
General Potential Risks:
Could be toxic to or cause allergic reactions
in humans
Transferred genes could mutate after
testing
Non-target organisms afected by toxins Unknown, but there is a risk
Increases resistance to toxin evolves in
pests Risk is known and there is
Accidental release may result in evidence of superweeds
competition with native plant species evolved from other
Super weeds - through cross-breeding the transgenic crops
introduced gene could be transferred to Ecosystem wide risks are
wild varieties unknown, but specific
examples [see 3.5.S3] have
Biodiversity reduced both plant
been examined.
populations by direct competition and
animal populations directly and indirectly
could be afected https://commons.wikimedia.org/wiki/File:VegCorn.jpg
3.5.S3 Analysis of data on risks to monarch butterflies of Bt crops.
Bt Corn
Risks to monarch butterflies
tudy
Laboratory s
The caterpillar stage of the
Monarch feeds on milkweed.
Milkweed commonly grows on
the edge of corn fields
Studies show some mortality in
Monarch caterpillars fed
milkweed leaves covered with
Bt corn pollen
Bt Corn
Risks to monarch butterflies
The caterpillar stage of the
Monarch feeds on milkweed.
Milkweed commonly grows on
Field studies
the edge of corn fields
Studies show some mortality in
Monarch caterpillars fed
milkweed leaves covered with
Bt corn pollen
Bt Corn
Risks to monarch butterflies
The caterpillar stage of the Analyse the data:
Monarch feeds on milkweed. 1. Explain why untransformed corn was
Milkweed commonly grows on included in the study
the edge of corn fields 2. Describe the trends seen in Laboratory
Studies show some mortality in study
Monarch caterpillars fed 3. Discuss whether there is evidence of Bt
milkweed leaves covered with corn pollen afecting Monarch caterpillar
Bt corn pollen survival. Are the error bars useful to the
discussion?
4. Describe the trends seen in the field
studies.
5. Suggest reasons why Monarch
caterpillars Bt toxicity is easier to detect
in laboratory studies.
Additional findings and questions:
6. Evaluate the hypothesis that Bt Corn
Sub-lethal afects of Bt toxins
adversely afectsare not wellbutterfly
Monarch known.
Data does show reduced feeding levels on milkweed
populations.
covered in Bt corn pollen.
The use of most toxic variety of Bt corn has been
discontinued and more modern varieties show little
measurable efect.
http://www.news.cornell.edu/sites/chr http://www.esa.org/tiee/vol/v2/issues/figure_sets/biotech/figure2.h
onicle.cornell/files/Losey1.72.JPG https://commons.wikimedia.org/wiki/File:Monarch_Butterfly_Showy_Male_3000px.j
tml
3.5.U5 Clones are groups of genetically identical organisms, derived from a single
original parent cell.
http://subsinai.com/diving/img/underwaterguide/corals/c_a_
00008.jpg
http://www.classzone.com/books/hs/ca/sc/bio_07
http://www.slideshare.net/gurustip/genetic-engineering-and-biotechnology-presentat
/animated_biology/bio_ch05_0149_ab_fission.htm
3.5.U6 Many plant species and some animal species have natural methods of cloning.
Monozygotic twins
Embryos can split and then continue to
develop separately to form identical
twins.
This is possible because in embryonic
development the cells are still unspecialised can
become any type of cell.
http://ars.els-cdn.com/content/image/1-s2.0-S1110569010000403
-gr2.jpg
As an artificial process this has limited value as only very
young embryonic cells can be used.
https://commons.wikimedia.org/wiki/File:Les_Twins_profile
3.5.S1 Design of an experiment to assess one factor afecting the rooting of stem-
cuttings.
Investigating artificial
propagation
Not
Many allcommon
stem cuttings
plantsform
root roots
easilyand grow
from to become clones, why?
stem
cuttings producing full-grown (clone) plants
quickly. Examples of factors that can be
investigated:
Substrate - water, type of soil
Numer of leaves on the stem
Length of stem cut
Efectiveness of commerical rooting
powders
Covering with a plastic bag (to
reduce transpiration)
https://apps.rhs.org.uk/Advice/AC
EImages//RHS_PUB0003119_679770.jp How the stem is cut
g Proximity of a node (point of
branching) to the base of the stem
Rigour of the design things to consider:
How will root growth/appearance be measured (you can
expect multiple roots of variable length)?
Which variables need to be controlled?
What plant species/variety (or selection of) will be examined?
How many cuttings are needed to ensure a reliable
investigation?
http://www.richmondhillreflectionsmag.com/wp-content/uploads/2013/02/IMG
3.5.U8 Methods have been developed for cloning adult animals using diferentiated
Cloning
cells.
differentiated cells
To clone an organism with desired traits is problematic as a
developed organism consists of specialised cells which are
multipotent, unipotent or cannot divide at all.
The method has been refined, but in essence remains the same. It is
now termed somatic-cell nuclear transfer.
http://www.californiaherps.com/frogs/images/xlaevistadpolesocjh12103.jpg
3.5.A4 Production of cloned embryos produced by somatic-cell nuclear transfer.
Cloning by somatic-cell nuclear
transfer (SCNT)
Creating a genetically identical organism through transfer of a differentiated
diploid nucleus.
somatic-cell nuclear transfer made easy: Make your own cloned mice and
1. Remove a diferentiated diploid nucleus learn the process of cloning
from the individual to be cloned. animal cells
2. Enucleate a donor egg cell.
3. Insert the diploid nucleus into the
enucleated egg cell.
4. Implant into the endometrium of a
surrogate mother and gestate.
5. The newborn will be genetically identical
to the donor nucleus parent.
http://learn.genetics.utah.edu/content/cloning
/clickandclone/
Bob Smullen