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1) Find three bad or evil databases in the biochemistry/chemistry world please give a reason

in a short sentence.
Answer:
A. http://webbook.nist.gov/chemistry/

Alasan singkat:
1. Tidak terdapat kotak pencarian (query)
2. Hanya terdiri dari list-list sehingga menyulitkan pencarian





B. http://www.chemnetbase.com/

Alasannya singkat:
1. Tidak terdapat kotak pencarian (query)
2. Hanya terdiri dari list-list sehingga menyulitkan pencarian
3. Terdapat link list yang tidak dapat diakses karena harus memiliki aplikasi
untuk membukanya. Misalkan:


4. Terdapat link yang apabila dibuka diharuskan untuk log in sebelum akses
halaman tersebut. Misalkan :


C. http://www.martindalecenter.com/Reference_3_Chemicals.html

Alasan singkat:
1. Tidak terdapat kotak pencarian sehingga sulit untuk mencari data yang
diinginkan
2. Datanya tidak lengkap dan tidak begitu akurat
2) Find the year in which most papers about enzyme kinetics were published using
PubMed (use Explore enter search term, then Analyze year)
Answer :
Paper mengenai enzim kinetik yang dipublikasi menggunakan PubMed paling banyak
terdapat pada tahun 2002 sebanyak 7981 items.


3) Find the molecules which were analyzed most in papers regarding "enzyme kinetics" and
"crickets using PubChem (use Explore, then Analyze CAS Number)
Answer :

4) Find the price for 1g ATP from Pfaltz & Bauer (in SciFinder use locate substance then
use the Erlenmeyer icon for price info)
Answer:
1g ATP from Pfaltz & Bauer = ADENOSINE 5-TRIPHOSPHATE , 1G ADENOSINE 5-
TRIPHOSPHATE , 1G Adenosine 5-Triphosphate Disodium Salt CAS: 987-65-5. The
Price is $89.95.

5) Goto Brenda and find out how many coronavirus types are in the DB (use TaxExplorer
and query)
Answer:
Disimpulkan terdapat 11 tipe coronavirus dalam database Brenda, antara lain:
a) Alphacoronavirus.
b) Human coronavirus.
c) SARS coronavirus Urbani.
d) Bovine coronavirus.
e) Feline coronavirus.
f) Murine coronavirus.
g) Puffinosis coronavirus.
h) Rat sialodacryoadenitis coronavirus.
i) Betacoronavirus.
j) Unidentifield human coronavirus
k) Alphacoronavirus SARS
Berikut ini adalah screenshot tipe organisme dari coronavirus





6) Goto Brenda and find out how many enzymes are listed as resistant against
perchloric acid, report publication title (goto Brenda, Advanced search)!
Answer:
Results 1 - 10 of 14
EC NUMBER RECOMMENDE
D NAME
SYNONYMS COMME
NTARY
1.1.1.37
malate
dehydrogenase
NAD+-MDH enzymes -
1.8.2.2
thiosulfate
dehydrogenase
enzymes, thiosulfate-
oxidizing
-
1.14.15.6
cholesterol
monooxygenase
(side-chain-
cleaving)
endoenzymes, cholesterol
side-chain-cleaving
-
1.14.15.6
cholesterol
monooxygenase
(side-chain-
cleaving)
enzymes, cholesterol side-
chain-cleaving
-
2.3.1.97
glycylpeptide N-
tetradecanoyltrans
ferase
myristoylating enzymes -
2.4.1.18
1,4-alpha-glucan
branching
enzyme
starch-branching enzymes IIa -
2.4.1.18
1,4-alpha-glucan
branching
enzyme
starch-branching enzymes
IIb
-
2.7.7.30
fucose-1-
phosphate
guanylyltransfera
se
GDP-L-fucose-synthesizing
enzymes
-
3.1.1.73
feruloyl esterase hemicellulase acessory
enzymes
-
3.1.22.4
crossover
junction
endodeoxyribonu
clease
Holliday junction-resolving
enzymes
-

EC Number Commentary
-



3.2.2.24
ADP-ribosyl-
[dinitrogen
reductase]
hydrolase
azoferredoxin-
activating enzymes
3.4.21.95
Snake venom
factor V activator
FV activating
enzymes
3.4.21.95
Snake venom
factor V activator
Human blood
coagulation Factor
V activating
enzymes
5.5.1.1
Muconate
cycloisomerase
Enzymes,
muconate-
lactonizing


7) Goto KEGG Ligand DB find the KEGG Numbers for D-Hexose and ATP
Answer:
KEGG IDs untuk D-Hexose yaitu C00738.

KEGG IDs untuk ATP yaitu C00002.


8) Goto KEGG Reaction Prediction (e-zyme) : How many similar reactions occur between
D-Hexose and ATP? (Enter above KEGG IDs, press view structures; press compute)
Answer:




9) Goto PubChem; What is the PubChem compound ID (CID) and the topological surface
area for Tobias acid?
Answer:
The Compound ID (CID) OF Tobias Acid in PubChem database is CID 6670

Gambar berikut ini merupakan asam tobias dengan efek 3D


The topological surface area for Tobias acid is 88,8