Anda di halaman 1dari 6

ANALISIS KELESTARIAN GEN VP26 White Spot Syndrome Virus (WSSV) PADA UDANG VANAME

(Litopenaeus
vannamei) ISOLAT INDONESIA
DESTI NUR RACHMA, Prof.drh. Kurniasih, M.Vsc.,Ph.D; Prof.drh.Widya Asmara, SU., Ph.D
Universitas Gadjah Mada, 2016 | Diunduh dari http://etd.repository.ugm.ac.id/

DAFTAR PUSTAKA

Adiwijaya, D., Supito dan I. Sumantri. 2008. Penerapan Teknologi Budidaya


Udang Vanname (L. Vannamei) Semi Intensif Pada Lokasi Tambak
salinitas Tinggi. Media Budidaya Air Payau Perekayasaan. Vol. 7.
P : 54 – 72

Alifuddin, M., Dana, D., Eidman, M., Malole, M., & Pasaribu, F. 2003.
Patogenesis of white spot virus infection (WSV) on black tiger shrimp
(Penaeus monodon Fab.). Jurnal Akuakultur Indonesia 2 (2): 82-92

Andrade, A. J. 2011. Shrimp immunological ractions against WSSV: role of


haemocytes on WSSV fate. Faculty of Bioscience Engineering: Universiteit
Gent

Anonim. 2000. Diagnostic manual of aquatic animal disease.Office international


des.epizooties. www.google.co.id. diakses tanggal 25 April 2015.

Anonim. 2002. Pengelolaan Kesehatan Ikan Budidaya Laut. Balai Budidaya Laut
Lampung. Bandar Lampung.

Anonim. 2004. Uji Teknologi Budidaya Udang Bebas Penyakit Bercak Putih.
Direktur Jenderal Perikanan Budidaya. Mina Bahari. 3 (02): 16-17

Anonim. 2008. Viralzone. http :/ viralzone. expasy. org/ all_byprotein/ 144. html#
tab.7. diakses tanggal 20 April 2015.

Anonim. 2015a.Taiwan Atlas : Maps and Online resort. www.google.co.id.


diakses tanggal 25 April 2015.

Anonim. 2015b. Species summary for white spot syndrome.www.google.co.id.


diakses tanggal 20 April 2015.

Anonim. 2015c. Shrimp news international .Produsen udang terbesar kedua di


dunia.http://www.undercurrentnews.com/2015/02/24/indonesia-becomes-
second-largest-vannamei-producer-in-the-world/. diakses pada tanggal 2
Mei 2015.

Aprijani, D.A., dan El Faizi, M.A. 2004. Bioinformatika: Perkembangan. Disiplin


ilmu. dan penerapannya di Indonesia.www.google.com.
http://bebas.vlsm.org/V06/kuliah/sistemoperasi/2003/Bioinfomatika.pdf1
, diakses 1 Mei 2015.

36
ANALISIS KELESTARIAN GEN VP26 White Spot Syndrome Virus (WSSV) PADA UDANG VANAME
(Litopenaeus 37
vannamei) ISOLAT INDONESIA
DESTI NUR RACHMA, Prof.drh. Kurniasih, M.Vsc.,Ph.D; Prof.drh.Widya Asmara, SU., Ph.D
Universitas Gadjah Mada, 2016 | Diunduh dari http://etd.repository.ugm.ac.id/

Brinkman, F. and D. Leipe. 2001. Phylogenetic Analysis. In: Bioinformatics: A


Practical Guide to the Analisys of Gene and Protein. BAXEVANIS, A.D.
and B.F.F.OUELLETTE (Eds.). John Willey & Sons. pp. 323 –358.

Cavalli, S., Forza, L.L. and Balfouier. 1997. Phylogentic analysis: Model and
Estimation Procedures.Am.J.Human Genet.Vol(19): 122-257.

Chen, L.L., Wang, H.C., Huang, C.J., Peng, S.E., Chen, Y.G., Lin,S.J., Chen,
W.Y., Dai, C.F., Yu, H.T., Wang, C.H., 2002. Transcriptional analysis of
the DNA polymerase gene of shrimp white spot syndrome virus.
Virology. Vol (301). P:13.

Dewi, R. A. 2013. Isolasi dan karakterisasi gen penyandi protein struktural VP24
white spot syndrome virus (WSSV) pada udang windu (Penaeus
monodon Fabricus 1798).

deFilippis,V.R., and L.P. Villareal. 2001. Virus Evolution. Fields-Virology (Two


volumes) 4th edition, Lippincott Wiliams & Wilkins Publishers.
pp : 294-308.
Dieu, B.T.M., Marks H., Siebenga JJ, Vlak JM. 2004. Molecular epidemiology of
white spot syndrome virus (WSSV) wihin Vietnam. Journal Gen
Virology.
Escobedo-Bonilla, C. M., Alday-Sanz, V., Sorgeloos, P., Pensaert, M. B., and
Nauwynck, H.J. 2008. A review on the morphology, molecular
characterization, morphogenesis and pathogenesis of the white spot
syndrome virus. Journal of fish diseases. Vol 31. P : 1-18.
Escobedo-Bonilla, C. M., Sergio V. P., and Claudio H. M. R. 2015. Efficacy of
double-stranded RNA against white spot syndrome virus (WSSV) non-
structural (orf89, wsv191) and structural (vp28, vp26) genes in the
Pacific white shrimp Litopenaeus vannamei. Journal of King Saud
University-Science.Vol (27).p : 182-188.

FAO. 2006. Cultured Aquatic Species Information Programme: Penaeus


monodon. Rome: Fisheries and Aquaculture Departement FAO.

FAO. 2010. The State of World Fisheries and Aquaculture. Rome, FAO. P :197

Flegel, T.W., 1997. Major viral diseases of the black tiger prawn _Penaeus
monodon. in Thailand. In: NRIA International Workshop, New
Approaches to Viral Diseases of Aquatic Animals. National Research
Institute of Aquaculture. Nansei. Mie. Japan. pp: 167–189.
ANALISIS KELESTARIAN GEN VP26 White Spot Syndrome Virus (WSSV) PADA UDANG VANAME
(Litopenaeus 38
vannamei) ISOLAT INDONESIA
DESTI NUR RACHMA, Prof.drh. Kurniasih, M.Vsc.,Ph.D; Prof.drh.Widya Asmara, SU., Ph.D
Universitas Gadjah Mada, 2016 | Diunduh dari http://etd.repository.ugm.ac.id/

Gao, L., and J. Qi. 2007. Whole genom molecular phylogeny of large dsDNA
viruses using composition vector method. BMC evolutionary Biology.

Handayani, R., Zaenal, A., Evy, M. N., dan Rahayu, R. 2012. Produksi Vaksin
DNA Rekombinan terhadap White Spot Syndrome Virus yang
Menginfeksi Udang di Indonesia. Kementerian Kelautan dan Kelautan
Direktorat Jenderal Perikanan Budidaya Balai Besar Pengembangan
Budidaya Air Payau Jepara.

Hameed, A.S.S, Anilkumar M., Raj M.L., Jayaraman K., 1998. Studies on the
pathogenicity of systemic ectodermal and mesodermal baculovirus
(SEMBV) and its detection in shrimps by immunological methods.
Aquaculture International. Vol (160), p: 31-45.

Hameed, A.S.S.,V. Parameswaran, S.S. Musthaq, R. Sudhakaran, G.


Balasubramanian, and K. Yoganandhan. 2005. A simple PCR procedure
to detect white spot syndrome virus (WSSV) of shrimp, Penaeus
monodon (Fabricious). Aquaculture International. Vol (13), p:441–450.

Haq, M. A. B., Durgadevi K., Banu M.N., Ahamad A. S., Tiwary C., and
Srinivasan K. 2015. Detection of White spot syndrome virus (WSSV) in
the pacific white shrimp in southern India using PCR, SEM, and
histological technique. Indian Journal of Biotechnology. Vol. 14.

Inouye, K., Miwa, S., Oseko, N., Nakano, H., Kimura, T., Momoyama, K.,
Hiraoka, M., 1994. Mass mortality of cultured kuruma shrimp Penaeus
japanicus in Japan in 1993: electron microscopic evidence of the
causative virus. Fish Pathology. Vol (29). p: 149–158

Lightner, D.V. 1996a. A Handbook of Shrimp Pathology and Diagnostic


Procedures for Disease of Cultured Penaeid Shrimp. World Aquaculture
Society, Baton Rouge, LA. 304p.

Lightner, D. V. 1996b. Epizootiology, distribution and the impact on international


trade of two penaeid shrimp viruses in the Americas. Rev. Science
Technology. - Off. Int. Epizoot. Vol (15). pp: 579– 601.

.
Li, S., D. Pearl and H. Doss. 1999. Phylogenetic treeconstruction using Markov
Chain Monte Carlo. Fred Hutchinson Cancer Research Center
Washington. http://www.stat.ohio-state.edu/~doss/Research/mctrees.
pdf. (23 Januari 2011).
ANALISIS KELESTARIAN GEN VP26 White Spot Syndrome Virus (WSSV) PADA UDANG VANAME
(Litopenaeus 39
vannamei) ISOLAT INDONESIA
DESTI NUR RACHMA, Prof.drh. Kurniasih, M.Vsc.,Ph.D; Prof.drh.Widya Asmara, SU., Ph.D
Universitas Gadjah Mada, 2016 | Diunduh dari http://etd.repository.ugm.ac.id/

Lo, C. F., Lei, J. H., Ho, C. H., Chen, C. H., Peng, S. E., Chen, Y. T.,Chou, C. M.,
Yeh, P. Y., Huang, C. J., Chou, H. Y., Wang, C. H., and Kou, G. H.
1996. Detection of baculovirus associated with white spot syndrome
(WSBV) in penaeid shrimps using polymerase chain reaction.
Dis. Aquat. Org. Vol (25).p: 133-141.

Lo, C. F., Hsu, H. C., Tsai, M. F., Ho, C. H., Peng, S. E., Kou, G. H., and
Lightner, D. V. 1997. Specific genomic fragment analysis of different
geographical clinical samples of shrimp white spot syndrome virus. Dis.
Aquat. Org. Vol (35). P:175-185.

Moon, C. H., Do J.W., Cha S.J., Yoon W.J., and 7 others. 2003. Highly
conserved sequences of three major virion proteins of a Korean isolate of
white spot syndrome virus (WSSV). Dis Aquat Org. Vol.53. p:11–13.

Nur'aini, Y. L., H. Bambang, S. Subyakto, dan T. Gemi.2007. Active Surveilance


of Infectious Myonecrosis Virus (IMNV) in Pond-Cultured White
Shrimp (Lithopenaeus vannamei) in East Java and Bali. Jurnal
Perikanan UGM. IX (1) : 25-31.

Nurhidayah. 2010. Penyebaran White Spot Shyndrome Virus Pada Pasca Larva
Udang Windu Dengan Substrat Yang berbeda. www.google.com, diakses
20 April 2015.

OIE.2012. Manual Diagnostic Test for Aquaic Animals 2012.

Rochman, K. 1995. Mengamati White Spot Secara Seluler. Techner Edisi 18.
Jakarta. Hal 7-9.

Reddy, A. Jeyasekaran, G., & Shakila, R. 2013. Morphogenesis, pathogenesis,


detection, and transmission risks of White spot synndrome virus in
shrimps. Fisheries and Aquaculture Journal 2013 : FAJ-66.

Relatami, A. N. R. 2013. Isolasi dan karakterisasi gen penyandi protein struktural


VP15 white spot syndrome virus (WSSV) pada udang windu (Penaeus
monodon Fabricus, 1798).

Sambrook, J., Fritsch. E. F., and Maniatis. 1989. Molecular Cloning: A


Laboratory Manual. 2nd Edition. CSHL Press. New York.

Sukenda, S., H. Dwinanti, dan M. Yuhana. 2009. Keberadaan White Spot


Syndrome Virus (WSSV), Taura Syndrome Virus (TSV), dan Infectious
Hypodermal Haematopoitic Necrosis Virus (IHHNV) di Tambak Intensif
ANALISIS KELESTARIAN GEN VP26 White Spot Syndrome Virus (WSSV) PADA UDANG VANAME
(Litopenaeus 40
vannamei) ISOLAT INDONESIA
DESTI NUR RACHMA, Prof.drh. Kurniasih, M.Vsc.,Ph.D; Prof.drh.Widya Asmara, SU., Ph.D
Universitas Gadjah Mada, 2016 | Diunduh dari http://etd.repository.ugm.ac.id/

Udang Vaname (Litopenaeus vannamei) di Bakauheni, Lampung Selatan.


Jurnal Akuakultur Indonesia. Vol. 8(2). hal 1-8.

Tamura, K., Dudley, J., Nei, M., and Kumar, S. 2007. MEGA4: Molecular
Evolutionary Genetiks Analysis (MEGA) software version 4.0.
Molecular Biology Evolution. Vol (24), p: 1596-1599.
Tsai, J.M., Wang H.C., Leu J.H., Wang A.H.J., Zhuang Y., Walker P.J. 2006.
Identification of the nucleocapsid, tegument and envelope proteins of the
shrimp white spot syndrome virus virion. Journal of Virology. Vol (80).
p: 3021-3029.
van Hulten, M.C W., Westenberg, M., Goodall, S.D. and Vlak, J.M. 2000a.
Identification of two major virion protein genes of white spot syndrome
virus of shrimp. Virology vol (266). P : 227-236.

van Hulten, M. C. W., Tsai, M. F., Schipper, C. A., Lo, C. F., Kou, G. H., and
Vlak. J. M. 2000. Analysis of a genomic segment of White Spot Syndrome
Virus of shrimp containing ribonucleotide reductase genes and repeat
regions. J. Gen. Virol. 81, 307-316.

van Hulten, M.C.W., J. Witeveldt, S. Peters, N. Kloosterboer, R. Tarchini, M.


Fiers., H. Sanbrink, R. K. Lankhorst, and J. M. Vlak. 2001. The white
spot syndrome virus DNA Genome Sequence. Virology.Vol (286). P : 7-
22.

Walker, P.J., and Winton, J.R. 2000. Emerging viral disease of fish and shrimp.
Journal Vet. Res. Vol (41).p:1-24.

Wang, C.H., Lo, C.F., Leu, J.H., Chou, C.M., Yeh, P.Y., Chou, H.Y., Tung, M.C.,
Chang, C.F., Su, M.S.,Kou, G.H., 1995. Purification and genomic
analysis of baculovirus associated with white spot syndrome_WSBVof
Penaeus monodon. Dis. Aquat. Org.Vol (23), 239–242.

Wang, W., He, J., Yang, F., Wu, G.K., Xu, X., 1997. Detection of prawn white
spot baculovirus by polymerase chain reaction. Acta Oceanol. Vol(18).
P : 591– 599.

Wang H. C., Yun-Shiang C., Guang-Hsiung K., and Chu-Fang L. 2004. White
Spot Syndrome Virus: Molecular Characterization of a Major Structural
Protein in a Baculovirus Expression System and Shrimp Hemocytes.
Marine Biotechnology. Vol (6): S95–S99.
ANALISIS KELESTARIAN GEN VP26 White Spot Syndrome Virus (WSSV) PADA UDANG VANAME
(Litopenaeus 41
vannamei) ISOLAT INDONESIA
DESTI NUR RACHMA, Prof.drh. Kurniasih, M.Vsc.,Ph.D; Prof.drh.Widya Asmara, SU., Ph.D
Universitas Gadjah Mada, 2016 | Diunduh dari http://etd.repository.ugm.ac.id/

Wang H.C., Hao-Ching W., Guang-Hsiung K., Chu-Fang L., dan Wei-Pang H.,
2007. Identification of Icp11, The Most Highly Expressed Gene of
Shrimp White Spot Syndrome Virus (WSSV). Diseases of Aquatic
Organisms.Vol (74): 179–89.

Wang, H. C., H. C. Wang, T. P. Ko, L. Yu-May, L. Jian-Horng, Ho. Chun-Han,


H. Wei-Pang, L. Chu-Fang and Andrew Wang HJ, 2008. White spot
syndrome virus protein ICP11: A histone-binding DNA mimic that
disrupts nucleosome assembly. PNAS. Vol (105). p : 20758-20763.

Wu, W., Lei,W., dan Xiaobo, Z. 2005. Identificaton of white spot syndrome virus
(WSSV) envelope proteins involved in shrimps infection. Virology.
P : 578-583.

Wyban, James A., Sweeney., and James, N. 1991. Intensive Shrimp Production
Technology. Oceanic Institute Shrimp Manual. Hawaii. P : 158.

Xie, X. and F. Yang. 2005. Interaction of white spot syndrome virus VP26 protein
with actin. Virology. Vol (336). P : 93-99.

Xie, X., Xu L., and Yang F. 2006. Proteomic Analysis of the Major Envelope and
Nucleocapsid Proteins of White Spot Syndrome Virus. Virology. Vol
(80). P :10615–10623.

Yang, F., He, J., Lin, X., Li, Q., Pan, D., Zhang, X., Xu, X., 2001.Complete
genome sequence of the shrimp white spot bacilliform virus. Virology.
Vol (75), p:11811–11820.

You, Z., Nadala Jr., E. C. B., Yang, J., and Loh, P. C. 2004. Conservation of the
DNA sequences encoding the major structural viral protein of WSSV.
Dis Aquat Org. Vol. 61. p: 159–163.

Yuwono, Triwibowo. 2005. Biologi Molekular. Penerbit Erlangga. Hal : 24.

Zwart, M. P. ,B. T. M. Dieu, L. Hemerik, and J. M. Vlak. 2010. Evolutionary


Trajectory of White Spot Syndrome Virus (WSSV) Genome Shrinkage
During Spread in Asia.Plus One.Vol (5). P :1-11.

Anda mungkin juga menyukai