Rani A. Wulandari
Fskultas Pertanian UGM
Gene – transfer methods
Conventional
breeding
Genetic engineering
karthikumarbt@kcetvnr.org 2
Bioteknologi Tanaman
1) Budidaya Jaringan Tanaman (Cloning)
2) Rekayasa genetika (Genetic Engineering)
Perkembangan tanaman
transgenik
Herbicide-resistant plants
Pest-resistant plants
Vaccine plants (just starting to be used)
Kedelai Roundup Ready™
Tahan hama
Varietas tahan hama dapat
dirakit dengan menyisipkan
gen Cry yang berasal dari
bakteria Bacillus thuringiensis
(Bt). Gen ini menyandi suatu
protein yang dapat membunuh
beberapa serangga.
Tetua
Jagung transgenik dengan
gen bt
Beras “Emas”
12
Medical hypothesis, 2006
Transgenic tomatoes –
expressing
different malarial
antigens
13
Delivery of a corn-based edible
vaccine
14
Tearless Onion
Dr Eady
Crop & Food Research in New Zealand
and his collaborators in Japan
As onions are sliced, cells are broken,
- generate sulphenic acids - unstable –
rearrange into a volatile gas - syn-propanethial-S-oxide – diffuses by air –
reaches the eye - reacts with the water to form a diluted solution of sulphuric acid –
Tear glands produce tears to dilute and flush out the irritant
15
COLORED FRIUTS/FLOWERS/VEGETABLES
The-orange-purple-green-cauliflowers
karthikumarbt@kcetvnr.org 16
Purple tomatoes high in anthocyanins
17
World's First Blue Roses On Display In Japan
Tokyo, Japan –
18
Transgenic plants and animals
Microinjection of
DNA into the
pronucleus of a
newly fertilized ~ 1-2
picoliter
egg.
vol is
injected.
Injection is usually
into the sperm’s ~5-40% of
pronucleus animals
because its larger. will
contain
transgene.
Purpose:
Introduce DNA into cells that
are below the top surface
layer of tissues (penetrate
into lower layers of a tissue)
lh3.googleusercontent.com
PERBANDINGAN REKAYASA GENOM INTI DENGAN
REKAYASA GENOM KLOROPLAS
Nucleus Engineering Chloroplast Engineering
Level ekspresi gen lebih rendah Level ekspresi transgen tinggi
1.Ekspresi gen
sehingga akumulasi protein asing sehingga akumulasi protein asing
rendah. tinggi.
Salinan transgen per sel sedikit Salinan transgen per sel banyak,
2.Jumlah kopian
karena dalam 1 sel hanya ada 1 inti sel. dapat mencapai lebih dari 10.000
transgen kopian.
Agrobacterium tumefaciens
Dumas et al.,karthikumarbt@kcetvnr.org
(2001), Proc. Natl. Acad. Sci. USA, 98:485 49
Production of transgenic plants
1. Penanda Sitologi
melihat/menghitung jumlah kromosom
melihat perbedaan kromosom antar individu
(FISH/GISH)
menggabungkan teknik sitologi dan
hibridisasi untuk menentukan urutan DNA
spesifik dalam kromosom
2. Penanda Biokimia
a. Penanda Protein
b. Penanda DNA
PENANDA SITOLOGI
FISH
(Fluorescent in situ hybridisation)
Kromosom diprobe dengan oligonukleotida berlabel
untuk mengetahui letak potongan tersebut dalam
kromosom
Kromosom
protoplas
squashed
PENANDA SITOLOGI
FISH
(Fluorescent in situ hybridisation)
Label
Radioaktif Non radio aktif
Kelemahan:
rumit
Mahal
Probenya sulit dibuat
Fluorescence in situ hybridization
(FISH)
Meningkatkan sensitifitas ,
kespesifikan dan resolusi analisis
kromosom
Menggunakan DNA yang dilabel
sebagai probe (beukuran ~40 kb)
untuk mendeteksi atau
mengkonfirmasi gen atau
kromosom abnormal yang
melebihi resolusi sitogenetik yang
rutin
Apakah FISH itu?
Fluorescence in situ hybridization (FISH) menggunakan molekul
fluorescent untuk mewarnai gen atau kromosom. Teknik ini secara
khusus berguna untuk gene mapping dan untuk mengidentifikasi
kromosom abnormal.
Kelemahan:
Jumlah protein yang terlarut dalam penyangga
ekstraksi sangat sedikit
Pola peptidanya tergantung dari lingkungan,
jaringan dan tingkat perkembangan sel
PENANDA PROTEIN
Isozyme salah satu penanda biokimia
Isozyme adalah enzim yang memiliki bentuk
berbeda tetapi memiliki fungsi yang identik
Kelebihan Isozyme
RAPD
(random amplified polymorphic DNA)
chloroplastDNA PCR-RFLP
allozymes (protein-electrophoresis)
Dominant versus Co-dominant
Dominant:
No distinction between homo- and heterozygotes
possible
AFLP, RAPD
Co-dominant:
homozygotes can be distinguished from
heterozygotes; allele frequencies can be calculated
Hybridization-based
Polymerase chain reaction-based
DNA sequence-based
DNA/DNA Hybridization
Denaturation
Elevated temperature
Kegunaan:
1. Mencari urutan DNA spesifik dalam suatu
campuran DNA secara selektif
2. Mendeteksi keragaman ukuran DNA hasil
pemotongan
PCR (Polimerase Chain Reaction)
Denaturasi 95C
Annealing tergantung ukuran primer
Pemanjangan untai DNA 72C
Random Amplified Polymorphic DNA
RAPD
RAPD
Identifikasi kultivar
Melacak lokasi gen yang diinginkan
Membuat peta genetik
Peta pautan genetik dengan potongan DNA
(penanda pola segregasi)
Menentukan kemurnian klon/hibrida unggul
Studi pautan antar sifat
Pemilihan tetua persilangan yang tepat untuk sifat-
sifat tertentu
RFLP
(Restriction fragment length polymorphism)
P1 AATCCGGACTAGCTTCTTCTTCTTCTTCTTTAGCGAATTAGG
P2 AAGGTTATTTCTTCTTCTTCTTCTTCTTCTTCTTAGGCTAGGCG
P1 P2
Gel configuration
Plant tissue culture
techniques
KULTUR JARINGAN
• Pengertian
→Tehnik perbanyakan dan atau budidaya tanaman
dengan menggunakan sel, jaringan, atau organ yang
dikerjakan dalam kondisi aseptik/secara in vitro
→Akibat adanya Kemampuan “totipotency”
yaitu kemampuan sel untuk melakukan seluruh
proses hidup
Concept of totipotency
• As cell divide mitotically, they do so
eqautionally to produce daughters
cells.
• G.Haberlandt’s claimed that one day
it could be possible to rear plants
from isolated would be rarely
surviving cells of flowering plants.
• He also sated that out of surviving
somatic cells artificial embryos would
be reared asexually
• Therefore every cell within the plant
has a potential to regenerate into a
whole plant.
Power of regeneration of plants
Kelebihan Kultur Jaringan
• Perbanyakan klonal
– Salah satu cara untuk mempertahankan heterozigositas
• Tahap multiplikasi dapat dilakukan berulang kali
untuk menghasilkan bibit dalam jumlah tidak
terbatas
– Digunakan secara rutin untuk tanaman hias dan beberapa
tanaman yang dapat diperbanyak secara vegetatif
• Siklus produksi dapat dimanipulasi dengan mudah
– Tidak dibatasi oleh musim dan kondisi lingkungan
• Dapat menghasilkan tanaman bebas penyakit
– Dapat digunakan untuk mengeliminasi virus dari induk
Aplikasi Kultur Jaringan
✓Micropropagasi
✓Konservasi Plasma nutfah
✓Variasi somaklonal
✓Kultur embrio
✓Produksi Haploid & dihaploid
✓Isolasi dan fusi protoplast
✓Kultur sel
• Meristem
(daun, akar, tunas/pucuk, shoot tip)
• Embrio
• Sel dan kalus
• Protoplast
• Anther, polen
Kultur Meristem Apical Meristem Culture
➢ menggunakan mikroskop
➢ dilakukan secara aseptik
KULTUR EMBRIO
KALUS
Morfogenesis
Kultur Protoplas
Protoplas Sel yang tidak mempunyai dinding sel
Membran sel
Kultur Protoplas:
1. Isolasi Protoplas
2. Regenerasi Dinding Sel & Morfogenesis
3. Fusi Protoplas
Protoplasts Isolation and Culture
Kultur Anther Padi
ii. BEBERAPA PROSES
DALAM kultur jaringan
Genotip
Sumber karbon
3. LINGKUNGAN Suhu
Kelembaban
Cahaya (Matahari)
Sterilitas
Kultur Jaringan Berdasarkan Jenis Media
yang Digunakan
• AUKSIN • SITOKININ
1. Merangsang pertumbuhan 1. Mengatur pertumbuhan
kalus melalui pembelahan sel
2. Merangsang pembesaran sel 2. Mengawasi perkecambahan
dan pertumbuhan akar biji
3. Mengatur morphogenensis 3. Mengatur transport auksin
→ zeatin, 2-iP, Kinetin,
→ IAA, NAA, IBA, PCPA, NOA, Dicamba, → Benzyl Amino Purin (BAP)
2,4D
Zat Pengatur Tumbuh
SITOKININ AUKSIN
TINGGI RENDAH
Proliferasi tunas axiler RENDAH
Inisiasi kalus
Embriogenesis
Pembentukan akar
Adventitious
Shoot
Root
Callus Auxin
B. Aseptic techniques
• Sterilization : destruction of
living matter
• Disinfectant : chemical agent
used to kill pathogens without
sterilizing matter to which
chemical is applied
• Sanitation: substantially
reducing & then maintaining the
micro-organism population in air
& on objects in lab to acceptable
levels.
Sterilization of plant tissues
• Sodium hypochloride (NaOCl) : 0.025%-0.25%
• Calcium hypochloride (CaOCl):
• Hydrogen peroxide (H2O2): 3% -10 %
• Bromium water: 1% - 2%
• Silver nitrate (AgNO3) : 1%
• Mercuric chloride (HgCl2): 0.1 % - 1.1 %
Lab instruments
• pH meter
• Balances
• Electronic hot air over
• Microscopes
• Centrifuge
• Filter sterilizing equipment
• Laminar air flow (LAF)
cabinet.
VII. Steps of Micropropagation
• Stage 0 – Selection & preparation of the mother plant
– sterilization of the plant tissue takes place
Y. Andi Trisyono
Department of Crop Protection
Faculty of Agriculture, GMU
May 10, 2022
Why crop protection? Why transgenic crops?
The adoption of transgenic crops world wide
Major transgenic crops for crop protection
Indonesian experience with the Bt transgenic
cotton
CROP
PROTECTION
Scientists: 25-30% world wide
Trisyono et al.
(2019). JPTI, in press
UGJ
Dua Hama Utama Jagung:
UGJ (umumnya menyerang tanaman
muda) and Penggerek batang jagung Asia
[PBJA] (menyerang batang)
PBJA PBJA
5/8/2022 20
Based on crops
5/8/2022 21
Adoption in U.S.
• The majority
of soybeans,
cotton, and
corn grown
in the U.S. is
GM
(Photos by ? )
Herbicide
tolerance
(Photos by ? )
Resistance to Fungal
Transgenic Wild-type
Disease
Sunflower
White mold
resistance
(Photos by ? )
WHY Bacillus thuringiensis?
Long history of safe use
Specificity
Variety of toxins
Learning from the past:
Indonesia
The transgenic cotton expressing Cry1Ac from
Bacillus thuringiensis
The target insect pest: Helicoverpa armigera
Additional target insect pest: Earias vitella
Response of the Bt
transgenic cotton to the
NON target insect pest
(Empoasca fabae)
The Bacillus thuringiensis Cry1Ac is not
INTENDED and effective against larvae of
Spodoptera litura (non-targeted insect pest)
TAKE HOME MESSAGES
An Overview
Jeff Stein
Biosafety Advisor
Program for Biosafety Systems
Bandung 2012
•Food/feed approvals:
•Arg, Aust, Brazil, China, EU, Jpn, Korea, Mex, Paraguay, Philippines, South Africa, Romania,
Russia, Taiwan, UK, Uruguay, U.S., Canada
+
DNA gold particles
pressure
and
vacuum
Y. Andi Trisyono
Full safety
assessment
Confined
Field Trials
Growth
Chamber or Safety Regulation
greenhouse
is Adapted to Each
Lab
Level
PERATURAN DAN PEDOMAN
1. SK Mentan No. 856/Kpts/HK.330/9/1997 tentang
Ketentuan Keamanan Hayati PBPHRG
2. SK Bersama Empat Menteri (Pertanian, Kehutanan dan
Perkebunan, Kesehatan, dan Pangan dan Hortikultura)
No. 998.1/Kpts/OT.210/9/99; 790.a/Kpts-IX/1999;
1145A/Menkes/SKB/IX/199; 015A?Nmeneg
PHOR/09/1999 tentang Keamanan Hayati dan
Keamanan Pangan Produk Pertanian Hasil Rekayasa
Genetik (PPHRG)
3. Pedoman pengujian keamanan hayati PPHRG
4. SK Mentan No. 737/Kpts/TP.240/9/98 tentang pengujian,
penilaian, dan pelepasan varietas
5. UU RI No 21 Tahun 2004 tentang Pengesahan
Cartagene Protocol on Biosafety to the Convention on
Biological Diversity
6. Peraturan Pemerintah RI Tahun 2005 tentang
Keamanan Hayati Produk Rekayasa Genetik
Peraturan terkait PRG (Djohor 2016)
1. Peraturan Presiden Nomor 53 Tahun 2014 tentang
Perubahan Atas Peraturan Presiden Nomor 39 Tahun
2010 tentang Komisi KKH PRG
2. Peraturan Menteri Pertanian No. 61/2011 tentang
Pengujian, Penilaian, Pelepasan dan Penarikan Varietas
3. Peraturan Kepala Badan POM tahun 2012 tentang
Pedoman Pengkajian Keamanan Pangan Produk
Rekayasa Genetik
4. Peraturan Menteri Lingkungan Hidup No. 25/2012
tentang Pedoman penyusunan dokumen Analisis Risiko
Lingkungan Produk Rekayasa Genetik
5. Peraturan Kepala Badan POM tahun 2012 tentang
Pengawasan Pelabelan Pangan Produk Rekayasa Genetik
PROTOKOL CARTAGENA
PENDEKATAN
KEHATI-HATIAN
(Djohor 2016)
KEBIJAKAN PEMANFAATAN PRODUK
REKAYASA GENETIK (PRG)
Pemanfaatan PRG memberi peluang untuk
menunjang produksi pertanian, ketahanan
pangan dan peningkatan kualitas hidup
manusia.
Pemanfaatan bioteknologi harus dapat dijamin
tidak menimbulkan dampak negatif terhadap
lingkungan hidup, kesehatan manusia
dan/atau kesehatan hewan
(Djohor 2016)
Pemohon Peraturan
Pemerintah RI No
FUT, LUT 21 Tahun 2005
Menteri yang
Tim Penilai dan berwenang/Kepala
Pelepas Varietas
LPND Menteri
Lingkungan
Hidup
Pelepasan KKHKP (= KKH)
BKKH
TTKHKP (= TTKH)
FUT LUT
TIM TEKNIS KEAMANAN HAYATI PRG
(TTKH PRG)
TTKH PRG dibentuk berdasarkan Surat Keputusan Ketua
KKH PRG Nomor 01/KKHPRG/11/2011 tanggal 4 November
2011.
TTKH PRG bertugas melakukan pengkajian dokumen
teknis,uji lanjutan keamanan hayati dan evaluasi atas
permohonan pengujian PRG di laboratorium, Fasilitas Uji
Terbatas (FUT) atau Lapangan Uji Terbatas (LUT).
TTKH PRG terdiri atas :
TTKH PRG bidang lingkungan berkedudukan di
Kementerian Lingkungan Hidup;
TTKH PRG bidang pangan berkedudukan di Badan
POM;
TTKH PRG bidang pakan berkedudukan di Kementerian
Pertanian.
(Djohor 2016)
ANALISIS RISIKO LINGKUNGAN PRG
Pasal 47 UU 32/2009 : Setiap usaha dan/atau
kegiatan yang berpotensi menimbulkan dampak
penting terhadap lingkungan hidup, ancaman
terhadap ekosistem dan kehidupan, dan/atau
kesehatan dan keselamatan manusia wajib
melakukan analisis risiko lingkungan hidup
➔ termasuk pelepasan dan peredaran PRG
Analisis Risiko Lingkungan meliputi: analisis
risiko, pengelolaan risiko, dan komunikasi risiko
(Djohor 2016)
Tim Pengkajian Hukum, Sosial Budaya,
Ekonomi Produk Rekayasa Genetik
(TIM PHSBE – PRG)
Peredaran/
1 Pengujian
PRG di Lab, 2 Pengkajian
Keamanan 3 Pelepasan
FUT, LUT Hayati PRG
(Djohor 2016)
Bagaimana PRG dikaji
keamanannya?
(Djohor 2016)
PRG yang telah mendapatkan
sertifikat Keamanan Hayati
(Djohor 2016)
Komersialisasi
• Tim Pengawas Tanaman Produk Rekayasa
Genetik Pertanian (SK Kepala Badan
Penelitian dan Pengembangan Pertanian No
145 Tahun 2021)
• Tugas utama: pengawasan, melakukan
kajian adanya laporan dampak negative,
dan menyusun hasil kajian
The development and
deployment of a GM crop
move through different
stages General
release
Full safety
assessment
Confined
Field Trials
Growth
Chamber or Safety Regulation
greenhouse
is Adapted to Each
Lab
Level
Confined Field Trials
Prevent Gene Flow Genes in Pollen Environment
I
S
O
L
A
T
Seed I
O
N
C
O
Prevent Eating N
F
I Eaten by
Plant
N • Livestock
Parts
E
M
• Humans
E
N
T
200m
200m
Regulated 200m
Maize
Trial
200m
Alternative Methods -- Maize
Gene flow in Maize
8
7
Percent Outcrossing
6
5
4
3
2
1
0
6 9 11 14 17
Distance ((m)
Isolation Distances for Some Crop
Species
Crop OECD Malawi Zambia Can/US
Species
Maize 200m 200m 200m 200m
Sorghum 200m 200m
Groundnut 5m 10m
Cotton 200m 100m 300m 200m
Pearl Millet 200m 200m
Cowpea 5m 5m
Wheat 50m 30m/10m
• How do we Prevent Eating?
– Material Confinement
Plant material produced at site
– Storage, labeling,
packaging, transport,
disposal
Crop Destruction
Looking for Volunteer Corn the 2nd Year over 45 Acres
Ethics in Biotechnology
Y. Andi Trisyono
Department of Crop Protection
Faculty of Agriculture, GMU
GM Products: Benefits and Controversies
(Sakarindr Bhumiratana [2005], The Ethical Use of GMOs)
Benefits Controversies
Crops Safety
Enhanced taste and quality Potential human health impact: allergens, transfer of
Reduced maturation time antibiotic resistance markers, unknown effects.
Increased nutrients, yields, and stress tolerance Potential environmental impact: unintended transfer
Improved resistance to disease, pests, and of transgenes through cross-pollination, unknown
herbicides effects on other organisms (e.g., soil microbes),
New products and growing techniques and loss of flora and fauna biodiversity
Animals Access and Intellectual Property
Increased resistance, productivity, hardiness, and Domination of world food production by a few
feed efficiency companies
Better yields of meat, eggs, and milk Biopiracy—foreign exploitation of natural resources
Environment Ethics
"Friendly" bioherbicides and bioinsecticides Violation of natural organisms' intrinsic values
Conservation of soil, water, and energy Tampering with nature by mixing genes among
Better natural waste management species
Labeling
Not mandatory in some countries
Society Society
Increased food security for growing populations New advances may be skewed to interests of rich
countries
Agenda
• Definition of ethics and bioethics
• Opportunities and making decisions
• Example: Issues related with biotech
food
• Communications
13.1 What Is Ethics?
• Modern Bioethics
– Primarily the work of two ethicists in the 1970s
• Joseph Fletcher refined utilitarian or "situational
ethics"
• Paul Ramsey refined deontology or "objectivism"
• Utilitarianism
– Emphasizes consequences, not intentions
– Analyze possible consequences to determine
course of action which will have the greatest
positive effect
– Disadvantages:
• Must assign a value to what is being considered
– Love and family not easily quantified
– Quantifiable things, such as material goods and life span
could be emphasized
• Who does the calculating and assigns the values?
(Source: Lisa Werner, Ethics and Biotechnology)
© 2013 Pearson Education, Inc.
13.1 What Is Ethics?
• Deontology (objectivism)
– There are some absolutes – definitive rules
that cannot be broken
– Deeply held convictions (may or may not be
religious)
– Advantage: firm guidelines, clear cut ethical
formula for decision making
– Disadvantage: rigid, may not take important
factors into account, or changes in values
Thomas M. Zinnen
Biotechnology Policy & Outreach Specialist
University of Wisconsin-Madison/Extension
The Challenge of Perception is
the Potential for The Feeling
of Deception
• How Consumers Think New Foods Are
Developed, Tested and Regulated
• How New Foods Are Actually
Developed, Tested and Regulated
The Consumer Sovereignty
Argument:
• The consumer has a right to know what
goes in the consumer’s body.
• WWW2NO: Whatever We Want to
Know
Need to:
3. Communication
▪ increase public understanding of the science
behind GMOs debate
▪ develop tools for public communication and
promoting the public understanding of this and
related issues
▪ not just one-way communication but should
encourage dialogue between all participants
(Sakarindr Bhumiratana [2005], The Ethical Use of GMOs)
Need to:
3. Communication (cont’d)